miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9851 3' -53.3 NC_002628.2 + 17191 0.67 0.609598
Target:  5'- cCACCAGaGAgCUUUccuccggACCGGGaaCACCCa -3'
miRNA:   3'- aGUGGUC-CUaGAAG-------UGGCCUa-GUGGG- -5'
9851 3' -53.3 NC_002628.2 + 14649 0.67 0.587627
Target:  5'- gUCAUCGuaGAUCcUCGCUGuGAUCAUCCa -3'
miRNA:   3'- -AGUGGUc-CUAGaAGUGGC-CUAGUGGG- -5'
9851 3' -53.3 NC_002628.2 + 11238 0.68 0.535182
Target:  5'- -aACCAGGGUCcucugggaagauugUCACCG-AUUACCUg -3'
miRNA:   3'- agUGGUCCUAGa-------------AGUGGCcUAGUGGG- -5'
9851 3' -53.3 NC_002628.2 + 24390 1.12 0.000469
Target:  5'- uUCACCAGGAUCUUCACCGGAUCACCCc -3'
miRNA:   3'- -AGUGGUCCUAGAAGUGGCCUAGUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.