miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9854 5' -43.5 NC_002628.2 + 5422 0.68 0.98351
Target:  5'- -cUGUAUGUACAUgaugUGcUGGGGGUACUc -3'
miRNA:   3'- aaACAUGUAUGUA----ACuGCUCUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5297 0.68 0.98351
Target:  5'- -cUGUAUGUACAUgaugUGcUGGGGGUACUc -3'
miRNA:   3'- aaACAUGUAUGUA----ACuGCUCUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5172 0.68 0.98351
Target:  5'- -cUGUAUGUACAUgaugUGcUGGGGGUACUc -3'
miRNA:   3'- aaACAUGUAUGUA----ACuGCUCUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5489 0.71 0.906379
Target:  5'- -aUGUAUGUACAUcGGCGAaGGUAUCc -3'
miRNA:   3'- aaACAUGUAUGUAaCUGCUcUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5364 0.71 0.906379
Target:  5'- -aUGUAUGUACAUcGGCGAaGGUAUCc -3'
miRNA:   3'- aaACAUGUAUGUAaCUGCUcUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5239 0.71 0.906379
Target:  5'- -aUGUAUGUACAUcGGCGAaGGUAUCc -3'
miRNA:   3'- aaACAUGUAUGUAaCUGCUcUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5095 1.11 0.006391
Target:  5'- cUUUGUACAUACAUUGACGAGAGUACCc -3'
miRNA:   3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5220 1.11 0.006391
Target:  5'- cUUUGUACAUACAUUGACGAGAGUACCc -3'
miRNA:   3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5'
9854 5' -43.5 NC_002628.2 + 5345 1.11 0.006391
Target:  5'- cUUUGUACAUACAUUGACGAGAGUACCc -3'
miRNA:   3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.