miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9867 3' -52.2 NC_002641.1 + 24148 0.67 0.969315
Target:  5'- ----aUCUCAUGGAaaaUCCCCGGGaUGc -3'
miRNA:   3'- augaaAGAGUACCU---GGGGGCUCaACa -5'
9867 3' -52.2 NC_002641.1 + 135491 0.67 0.959073
Target:  5'- cACUUcCUCccGGACCCCaCGAGa--- -3'
miRNA:   3'- aUGAAaGAGuaCCUGGGG-GCUCaaca -5'
9867 3' -52.2 NC_002641.1 + 146981 0.67 0.959073
Target:  5'- cACUUcCUCccGGACCCCaCGAGa--- -3'
miRNA:   3'- aUGAAaGAGuaCCUGGGG-GCUCaaca -5'
9867 3' -52.2 NC_002641.1 + 2122 0.85 0.213412
Target:  5'- aUACUUUCUUAUGGACCgCCGAGgUGUg -3'
miRNA:   3'- -AUGAAAGAGUACCUGGgGGCUCaACA- -5'
9867 3' -52.2 NC_002641.1 + 121601 0.85 0.213412
Target:  5'- aUACUUUCUUAUGGACCgCCGAGgUGUg -3'
miRNA:   3'- -AUGAAAGAGUACCUGGgGGCUCaACA- -5'
9867 3' -52.2 NC_002641.1 + 2442 1.07 0.008499
Target:  5'- aUACUUUCUCAUGGACCCCCGAGUUGUg -3'
miRNA:   3'- -AUGAAAGAGUACCUGGGGGCUCAACA- -5'
9867 3' -52.2 NC_002641.1 + 121281 1.07 0.008499
Target:  5'- aUACUUUCUCAUGGACCCCCGAGUUGUg -3'
miRNA:   3'- -AUGAAAGAGUACCUGGGGGCUCAACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.