miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9869 3' -45.4 NC_002641.1 + 119216 0.66 0.999998
Target:  5'- aUCGAUCUucagACAGuUUUGUUgucUCCCuuGGUUg -3'
miRNA:   3'- -AGCUAGA----UGUC-AAAUAAa--AGGG--CCGG- -5'
9869 3' -45.4 NC_002641.1 + 31960 0.66 0.999997
Target:  5'- -gGGUCUGCGGacaucauacAUUUUUCCGGUg -3'
miRNA:   3'- agCUAGAUGUCaaa------UAAAAGGGCCGg -5'
9869 3' -45.4 NC_002641.1 + 4506 0.66 0.999997
Target:  5'- aUCGAUCUucagACAGuUUUGUUgucUCCCuugguucuGGUCg -3'
miRNA:   3'- -AGCUAGA----UGUC-AAAUAAa--AGGG--------CCGG- -5'
9869 3' -45.4 NC_002641.1 + 10498 0.66 0.999994
Target:  5'- cUCGGccguuaucUCUACuGgggcuugccugUCCCGGCCg -3'
miRNA:   3'- -AGCU--------AGAUGuCaaauaaa----AGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 129855 0.67 0.999985
Target:  5'- -gGGUCgGCGGUcaccga-CCCGGCCu -3'
miRNA:   3'- agCUAGaUGUCAaauaaaaGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 152618 0.67 0.999985
Target:  5'- -gGGUCgGCGGUcaccga-CCCGGCCu -3'
miRNA:   3'- agCUAGaUGUCAaauaaaaGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 65369 0.67 0.999981
Target:  5'- cUCGGcaUGCAGaUUUGaaugugUCCCGGCUa -3'
miRNA:   3'- -AGCUagAUGUC-AAAUaaa---AGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 475 0.67 0.999981
Target:  5'- cCGAaacCUcCAGUgaccUGUUUUCCCucGGCCa -3'
miRNA:   3'- aGCUa--GAuGUCAa---AUAAAAGGG--CCGG- -5'
9869 3' -45.4 NC_002641.1 + 40694 0.67 0.999964
Target:  5'- cUGAUCUGCGGgaUGUggUCCCucGCg -3'
miRNA:   3'- aGCUAGAUGUCaaAUAaaAGGGc-CGg -5'
9869 3' -45.4 NC_002641.1 + 123247 0.68 0.999935
Target:  5'- cCGAaacCUcCAGUgccUGUUUUCCCucGGCCa -3'
miRNA:   3'- aGCUa--GAuGUCAa--AUAAAAGGG--CCGG- -5'
9869 3' -45.4 NC_002641.1 + 130251 0.69 0.999754
Target:  5'- aCGuccUCUGCAuc--AUUUUCCCGGUCu -3'
miRNA:   3'- aGCu--AGAUGUcaaaUAAAAGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 152221 0.69 0.999754
Target:  5'- aCGuccUCUGCAuc--AUUUUCCCGGUCu -3'
miRNA:   3'- aGCu--AGAUGUcaaaUAAAAGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 38346 0.7 0.999501
Target:  5'- aCGAUCgugGCGGgaacaUAUUUuuaUCCCGuGCCc -3'
miRNA:   3'- aGCUAGa--UGUCaa---AUAAA---AGGGC-CGG- -5'
9869 3' -45.4 NC_002641.1 + 135005 0.7 0.999489
Target:  5'- cUCGGUCUGCuGUUuccuacccucucuUAUUUUCaCCGGaCa -3'
miRNA:   3'- -AGCUAGAUGuCAA-------------AUAAAAG-GGCCgG- -5'
9869 3' -45.4 NC_002641.1 + 147468 0.7 0.999489
Target:  5'- cUCGGUCUGCuGUUuccuacccucucuUAUUUUCaCCGGaCa -3'
miRNA:   3'- -AGCUAGAUGuCAA-------------AUAAAAG-GGCCgG- -5'
9869 3' -45.4 NC_002641.1 + 153295 0.72 0.995912
Target:  5'- cCGAUCUgGCAGacgcuugcgUCCUGGCCu -3'
miRNA:   3'- aGCUAGA-UGUCaaauaaa--AGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 129178 0.72 0.995912
Target:  5'- cCGAUCUgGCAGacgcuugcgUCCUGGCCu -3'
miRNA:   3'- aGCUAGA-UGUCaaauaaa--AGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 95049 0.73 0.991143
Target:  5'- -aGAUC---AGUUgcauUUUUCCCGGCCa -3'
miRNA:   3'- agCUAGaugUCAAau--AAAAGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 118365 1.14 0.018665
Target:  5'- gUCGAUCUACAGUUUAUUUUCCCGGCCc -3'
miRNA:   3'- -AGCUAGAUGUCAAAUAAAAGGGCCGG- -5'
9869 3' -45.4 NC_002641.1 + 5358 1.14 0.018665
Target:  5'- gUCGAUCUACAGUUUAUUUUCCCGGCCc -3'
miRNA:   3'- -AGCUAGAUGUCAAAUAAAAGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.