miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9869 5' -56.6 NC_002641.1 + 58597 0.66 0.894092
Target:  5'- -gGGGCGcGAUGuAUCaCUCGCAGCcCa -3'
miRNA:   3'- cgCCCGCuUUAC-UAGcGGGCGUCGaG- -5'
9869 5' -56.6 NC_002641.1 + 67874 0.66 0.894092
Target:  5'- -gGGGCGA---GAUCGaaCUCGCAGUUUg -3'
miRNA:   3'- cgCCCGCUuuaCUAGC--GGGCGUCGAG- -5'
9869 5' -56.6 NC_002641.1 + 30157 0.66 0.873324
Target:  5'- cUGGGCGAucugacuagagAAUGuUCG-CCGCAGCg- -3'
miRNA:   3'- cGCCCGCU-----------UUACuAGCgGGCGUCGag -5'
9869 5' -56.6 NC_002641.1 + 148952 0.68 0.791153
Target:  5'- cGCGGaagGCGGcauGUGAgcugcggCGCCUGCuGCUCc -3'
miRNA:   3'- -CGCC---CGCUu--UACUa------GCGGGCGuCGAG- -5'
9869 5' -56.6 NC_002641.1 + 133521 0.68 0.791153
Target:  5'- cGCGGaagGCGGcauGUGAgcugcggCGCCUGCuGCUCc -3'
miRNA:   3'- -CGCC---CGCUu--UACUa------GCGGGCGuCGAG- -5'
9869 5' -56.6 NC_002641.1 + 118269 0.68 0.772757
Target:  5'- aCGGGCccguuauccucGAGccGGUCGCCCGCcGCg- -3'
miRNA:   3'- cGCCCG-----------CUUuaCUAGCGGGCGuCGag -5'
9869 5' -56.6 NC_002641.1 + 76938 0.69 0.724746
Target:  5'- gGUGGG-GGAAUG-UCGCCCGCgaagGGUUUa -3'
miRNA:   3'- -CGCCCgCUUUACuAGCGGGCG----UCGAG- -5'
9869 5' -56.6 NC_002641.1 + 118579 0.74 0.438794
Target:  5'- uGCGGGCGAucauuUCGCCCGCA-CUa -3'
miRNA:   3'- -CGCCCGCUuuacuAGCGGGCGUcGAg -5'
9869 5' -56.6 NC_002641.1 + 5143 0.74 0.438794
Target:  5'- uGCGGGCGAucauuUCGCCCGCA-CUa -3'
miRNA:   3'- -CGCCCGCUuuacuAGCGGGCGUcGAg -5'
9869 5' -56.6 NC_002641.1 + 5324 1.12 0.001669
Target:  5'- uGCGGGCGAAAUGAUCGCCCGCAGCUCg -3'
miRNA:   3'- -CGCCCGCUUUACUAGCGGGCGUCGAG- -5'
9869 5' -56.6 NC_002641.1 + 118399 1.12 0.001669
Target:  5'- uGCGGGCGAAAUGAUCGCCCGCAGCUCg -3'
miRNA:   3'- -CGCCCGCUUUACUAGCGGGCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.