miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9870 3' -49.2 NC_002641.1 + 20943 0.66 0.997104
Target:  5'- -cGCuUUCGCGCcucaGCGAGCCAAa--- -3'
miRNA:   3'- guCGcAAGCGUGa---CGCUUGGUUauua -5'
9870 3' -49.2 NC_002641.1 + 5700 0.66 0.996567
Target:  5'- cCGGaCGUUCGCACcuaaAGCCAAUAGUa -3'
miRNA:   3'- -GUC-GCAAGCGUGacgcUUGGUUAUUA- -5'
9870 3' -49.2 NC_002641.1 + 118023 0.66 0.996567
Target:  5'- cCGGaCGUUCGCACcuaaAGCCAAUAGUa -3'
miRNA:   3'- -GUC-GCAAGCGUGacgcUUGGUUAUUA- -5'
9870 3' -49.2 NC_002641.1 + 118059 0.67 0.99252
Target:  5'- gAGCGgccgaucagCGCGCgGCGGGCCGAc--- -3'
miRNA:   3'- gUCGCaa-------GCGUGaCGCUUGGUUauua -5'
9870 3' -49.2 NC_002641.1 + 5663 0.67 0.99252
Target:  5'- gAGCGgccgaucagCGCGCgGCGGGCCGAc--- -3'
miRNA:   3'- gUCGCaa-------GCGUGaCGCUUGGUUauua -5'
9870 3' -49.2 NC_002641.1 + 10224 0.68 0.991375
Target:  5'- cCAGaaCGUUUGCAaugGCGAACCAAg--- -3'
miRNA:   3'- -GUC--GCAAGCGUga-CGCUUGGUUauua -5'
9870 3' -49.2 NC_002641.1 + 23494 0.68 0.988673
Target:  5'- --uCGUUCuuaaugGCGCUGCGGACCGAUu-- -3'
miRNA:   3'- gucGCAAG------CGUGACGCUUGGUUAuua -5'
9870 3' -49.2 NC_002641.1 + 95967 0.68 0.988673
Target:  5'- uCGGC---CGCGCUGC-AACCGAUGAUg -3'
miRNA:   3'- -GUCGcaaGCGUGACGcUUGGUUAUUA- -5'
9870 3' -49.2 NC_002641.1 + 5268 0.7 0.96439
Target:  5'- uCGGCGaugcaaUUCGCGCUGCGAAa-AAUAAa -3'
miRNA:   3'- -GUCGC------AAGCGUGACGCUUggUUAUUa -5'
9870 3' -49.2 NC_002641.1 + 118455 0.7 0.96439
Target:  5'- uCGGCGaugcaaUUCGCGCUGCGAAa-AAUAAa -3'
miRNA:   3'- -GUCGC------AAGCGUGACGCUUggUUAUUa -5'
9870 3' -49.2 NC_002641.1 + 154446 0.7 0.960762
Target:  5'- cCGGCGaccCGCACggauaucGCGGACCAGUAc- -3'
miRNA:   3'- -GUCGCaa-GCGUGa------CGCUUGGUUAUua -5'
9870 3' -49.2 NC_002641.1 + 128026 0.7 0.960762
Target:  5'- cCGGCGaccCGCACggauaucGCGGACCAGUAc- -3'
miRNA:   3'- -GUCGCaa-GCGUGa------CGCUUGGUUAUua -5'
9870 3' -49.2 NC_002641.1 + 146538 0.7 0.956886
Target:  5'- gCGGCGggacCGCcauCUGCGAACCAcgcGUGGUa -3'
miRNA:   3'- -GUCGCaa--GCGu--GACGCUUGGU---UAUUA- -5'
9870 3' -49.2 NC_002641.1 + 135934 0.7 0.956886
Target:  5'- gCGGCGggacCGCcauCUGCGAACCAcgcGUGGUa -3'
miRNA:   3'- -GUCGCaa--GCGu--GACGCUUGGU---UAUUA- -5'
9870 3' -49.2 NC_002641.1 + 126482 0.8 0.543843
Target:  5'- aCAcCGUgCGCGCUGCGGACCGGUAAg -3'
miRNA:   3'- -GUcGCAaGCGUGACGCUUGGUUAUUa -5'
9870 3' -49.2 NC_002641.1 + 155991 0.8 0.543843
Target:  5'- aCAcCGUgCGCGCUGCGGACCGGUAAg -3'
miRNA:   3'- -GUcGCAaGCGUGACGCUUGGUUAUUa -5'
9870 3' -49.2 NC_002641.1 + 5923 1.06 0.01676
Target:  5'- uCAGCGUUCGCACUGCGAACCAAUAAUa -3'
miRNA:   3'- -GUCGCAAGCGUGACGCUUGGUUAUUA- -5'
9870 3' -49.2 NC_002641.1 + 117799 1.06 0.01676
Target:  5'- uCAGCGUUCGCACUGCGAACCAAUAAUa -3'
miRNA:   3'- -GUCGCAAGCGUGACGCUUGGUUAUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.