miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9877 3' -55.9 NC_002641.1 + 67325 0.67 0.879273
Target:  5'- ---aGGcACGCCuCCAUCU-GUUCGGAa -3'
miRNA:   3'- ucaaCC-UGCGGcGGUAGGuCAAGCCU- -5'
9877 3' -55.9 NC_002641.1 + 138124 0.68 0.84127
Target:  5'- ---gGGAgGCCGCCAUCagcaggAGUUUGGc -3'
miRNA:   3'- ucaaCCUgCGGCGGUAGg-----UCAAGCCu -5'
9877 3' -55.9 NC_002641.1 + 5578 0.71 0.703092
Target:  5'- cGGggGGACGCCGCCGcggaCCGGUcaauguggCGGu -3'
miRNA:   3'- -UCaaCCUGCGGCGGUa---GGUCAa-------GCCu -5'
9877 3' -55.9 NC_002641.1 + 118144 0.71 0.703092
Target:  5'- cGGggGGACGCCGCCGcggaCCGGUcaauguggCGGu -3'
miRNA:   3'- -UCaaCCUGCGGCGGUa---GGUCAa-------GCCu -5'
9877 3' -55.9 NC_002641.1 + 59057 0.72 0.632166
Target:  5'- ---cGGACGCCGCaaaGUCCAGgcUCGcGAa -3'
miRNA:   3'- ucaaCCUGCGGCGg--UAGGUCa-AGC-CU- -5'
9877 3' -55.9 NC_002641.1 + 77946 1.09 0.00304
Target:  5'- gAGUUGGACGCCGCCAUCCAGUUCGGAa -3'
miRNA:   3'- -UCAACCUGCGGCGGUAGGUCAAGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.