miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9877 5' -51.2 NC_002641.1 + 116786 0.66 0.995771
Target:  5'- aCGUCCGcgUUGCCAugaGCGagCCaguuuugACCAGa -3'
miRNA:   3'- -GCAGGCuuGAUGGU---UGCaaGG-------UGGUC- -5'
9877 5' -51.2 NC_002641.1 + 145727 0.66 0.993488
Target:  5'- gCGUaCCGAcgGCUGCCG-CGUggacgUCCGCgGGu -3'
miRNA:   3'- -GCA-GGCU--UGAUGGUuGCA-----AGGUGgUC- -5'
9877 5' -51.2 NC_002641.1 + 136745 0.66 0.993488
Target:  5'- gCGUaCCGAcgGCUGCCG-CGUggacgUCCGCgGGu -3'
miRNA:   3'- -GCA-GGCU--UGAUGGUuGCA-----AGGUGgUC- -5'
9877 5' -51.2 NC_002641.1 + 16228 0.66 0.991404
Target:  5'- aGUCCGA--UACgUAGCGUUuauaagCCACCAGc -3'
miRNA:   3'- gCAGGCUugAUG-GUUGCAA------GGUGGUC- -5'
9877 5' -51.2 NC_002641.1 + 5445 0.66 0.991404
Target:  5'- aCGUCCGAACggGCC--CGUuaUCCucgaGCCGGu -3'
miRNA:   3'- -GCAGGCUUGa-UGGuuGCA--AGG----UGGUC- -5'
9877 5' -51.2 NC_002641.1 + 118277 0.66 0.991404
Target:  5'- aCGUCCGAACggGCC--CGUuaUCCucgaGCCGGu -3'
miRNA:   3'- -GCAGGCUUGa-UGGuuGCA--AGG----UGGUC- -5'
9877 5' -51.2 NC_002641.1 + 119609 0.66 0.991404
Target:  5'- gGUCCGcuGgUGCCGACGa-UCGCCGGg -3'
miRNA:   3'- gCAGGCu-UgAUGGUUGCaaGGUGGUC- -5'
9877 5' -51.2 NC_002641.1 + 4114 0.66 0.991404
Target:  5'- gGUCCGcuGgUGCCGACGa-UCGCCGGg -3'
miRNA:   3'- gCAGGCu-UgAUGGUUGCaaGGUGGUC- -5'
9877 5' -51.2 NC_002641.1 + 128717 0.67 0.983876
Target:  5'- gGUCCGAccgcuuccGCUACUAGCGaaCCGCg-- -3'
miRNA:   3'- gCAGGCU--------UGAUGGUUGCaaGGUGguc -5'
9877 5' -51.2 NC_002641.1 + 153756 0.67 0.983876
Target:  5'- gGUCCGAccgcuuccGCUACUAGCGa--CACCGc -3'
miRNA:   3'- gCAGGCU--------UGAUGGUUGCaagGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 156037 0.68 0.977421
Target:  5'- aGUCCGu-CUGCUcGCGgaCCACCGc -3'
miRNA:   3'- gCAGGCuuGAUGGuUGCaaGGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 126435 0.68 0.977421
Target:  5'- aGUCCGu-CUGCUcGCGgaCCACCGc -3'
miRNA:   3'- gCAGGCuuGAUGGuUGCaaGGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 92674 0.68 0.977421
Target:  5'- gGUUCGAAag---AGCGUUCCGCCAGc -3'
miRNA:   3'- gCAGGCUUgauggUUGCAAGGUGGUC- -5'
9877 5' -51.2 NC_002641.1 + 59011 0.68 0.974895
Target:  5'- aCGUCCGAcuaaaACUAUgAACGUUcuuaauggaCCGCUGGg -3'
miRNA:   3'- -GCAGGCU-----UGAUGgUUGCAA---------GGUGGUC- -5'
9877 5' -51.2 NC_002641.1 + 11217 0.68 0.97217
Target:  5'- uCGUgCGAGCgcCCAACGUgaCCACUAu -3'
miRNA:   3'- -GCAgGCUUGauGGUUGCAa-GGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 47629 0.69 0.969238
Target:  5'- --aCCGAuuuggugguaGCUGCCAACGaaaCGCCAGa -3'
miRNA:   3'- gcaGGCU----------UGAUGGUUGCaagGUGGUC- -5'
9877 5' -51.2 NC_002641.1 + 157288 0.69 0.966091
Target:  5'- gCG-CCGAcaacGCUGCCuGCGUgCCGCCGc -3'
miRNA:   3'- -GCaGGCU----UGAUGGuUGCAaGGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 125184 0.69 0.966091
Target:  5'- gCG-CCGAcaacGCUGCCuGCGUgCCGCCGc -3'
miRNA:   3'- -GCaGGCU----UGAUGGuUGCAaGGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 58892 0.72 0.876226
Target:  5'- gCGUCCGAagcAgUACCGAUGacUCCACCGc -3'
miRNA:   3'- -GCAGGCU---UgAUGGUUGCa-AGGUGGUc -5'
9877 5' -51.2 NC_002641.1 + 77912 1.1 0.008237
Target:  5'- uCGUCCGAACUACCAACGUUCCACCAGg -3'
miRNA:   3'- -GCAGGCUUGAUGGUUGCAAGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.