miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9878 5' -55.5 NC_002641.1 + 38838 0.66 0.951289
Target:  5'- cCGUC-CGGUCGaugaGCACGUGAUucaauucauCGUg -3'
miRNA:   3'- aGCAGaGCUAGCg---CGUGCGCUGu--------GCG- -5'
9878 5' -55.5 NC_002641.1 + 21130 0.66 0.938185
Target:  5'- cCGUUUUGGcUCGCcugagGCGCgaaaGCGACugGCu -3'
miRNA:   3'- aGCAGAGCU-AGCG-----CGUG----CGCUGugCG- -5'
9878 5' -55.5 NC_002641.1 + 126660 0.67 0.928302
Target:  5'- -gGUC-CGcagCGCGCACGgUGuGCGCGCg -3'
miRNA:   3'- agCAGaGCua-GCGCGUGC-GC-UGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 155812 0.67 0.928302
Target:  5'- -gGUC-CGcagCGCGCACGgUGuGCGCGCg -3'
miRNA:   3'- agCAGaGCua-GCGCGUGC-GC-UGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 99249 0.67 0.922472
Target:  5'- --aUCUaGGUCGCGUGCGCGAUcgagacgGCGUc -3'
miRNA:   3'- agcAGAgCUAGCGCGUGCGCUG-------UGCG- -5'
9878 5' -55.5 NC_002641.1 + 38183 0.67 0.917494
Target:  5'- aUCGUCUCG-UCGuUGCACG-GAUAaGCc -3'
miRNA:   3'- -AGCAGAGCuAGC-GCGUGCgCUGUgCG- -5'
9878 5' -55.5 NC_002641.1 + 129227 0.67 0.917494
Target:  5'- cCGUCUcCGGUCGUGUGCcCGACuguaacaugcccGCGUa -3'
miRNA:   3'- aGCAGA-GCUAGCGCGUGcGCUG------------UGCG- -5'
9878 5' -55.5 NC_002641.1 + 153245 0.67 0.917494
Target:  5'- cCGUCUcCGGUCGUGUGCcCGACuguaacaugcccGCGUa -3'
miRNA:   3'- aGCAGA-GCUAGCGCGUGcGCUG------------UGCG- -5'
9878 5' -55.5 NC_002641.1 + 92469 0.67 0.911744
Target:  5'- aUCGUCggucugCGcAUCGCccauGCugGCGGaACGCu -3'
miRNA:   3'- -AGCAGa-----GC-UAGCG----CGugCGCUgUGCG- -5'
9878 5' -55.5 NC_002641.1 + 66917 0.67 0.911744
Target:  5'- aUCGUCaUCGGagGCgGCACGCGAa--GUa -3'
miRNA:   3'- -AGCAG-AGCUagCG-CGUGCGCUgugCG- -5'
9878 5' -55.5 NC_002641.1 + 125395 0.67 0.899559
Target:  5'- uUCG-CUCcugCGCGCcguuagcgaGCgGCGGCACGCa -3'
miRNA:   3'- -AGCaGAGcuaGCGCG---------UG-CGCUGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 157077 0.67 0.899559
Target:  5'- uUCG-CUCcugCGCGCcguuagcgaGCgGCGGCACGCa -3'
miRNA:   3'- -AGCaGAGcuaGCGCG---------UG-CGCUGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 5725 0.68 0.886476
Target:  5'- uUCaUCUCGG-CGCGCcgaGCG-CGCGCu -3'
miRNA:   3'- -AGcAGAGCUaGCGCGug-CGCuGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 117997 0.68 0.886476
Target:  5'- uUCaUCUCGG-CGCGCcgaGCG-CGCGCu -3'
miRNA:   3'- -AGcAGAGCUaGCGCGug-CGCuGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 78828 0.68 0.872523
Target:  5'- --aUCUCGA-CGauaGCACGCcuaucauucuaGACACGCa -3'
miRNA:   3'- agcAGAGCUaGCg--CGUGCG-----------CUGUGCG- -5'
9878 5' -55.5 NC_002641.1 + 128171 0.69 0.857736
Target:  5'- cCGUC-CGAuUCGCGCcguucucggGCGCGaACugGUg -3'
miRNA:   3'- aGCAGaGCU-AGCGCG---------UGCGC-UGugCG- -5'
9878 5' -55.5 NC_002641.1 + 154301 0.69 0.857736
Target:  5'- cCGUC-CGAuUCGCGCcguucucggGCGCGaACugGUg -3'
miRNA:   3'- aGCAGaGCU-AGCGCG---------UGCGC-UGugCG- -5'
9878 5' -55.5 NC_002641.1 + 4193 0.69 0.850044
Target:  5'- -aGUggUGGUCGCGUACGUGACGgGg -3'
miRNA:   3'- agCAgaGCUAGCGCGUGCGCUGUgCg -5'
9878 5' -55.5 NC_002641.1 + 119529 0.69 0.850044
Target:  5'- -aGUggUGGUCGCGUACGUGACGgGg -3'
miRNA:   3'- agCAgaGCUAGCGCGUGCGCUGUgCg -5'
9878 5' -55.5 NC_002641.1 + 117010 0.69 0.825845
Target:  5'- aUCGgcgCGGaauuggagUCGCGguCGUGGCGCGCu -3'
miRNA:   3'- -AGCagaGCU--------AGCGCguGCGCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.