miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9879 5' -53.7 NC_002641.1 + 38350 0.66 0.97136
Target:  5'- uGUAAGGAGCGCaUCUGCA---UCGGCa -3'
miRNA:   3'- cCAUUUCUCGCG-GGAUGUcugGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 155651 0.66 0.968392
Target:  5'- uGGUAAgaggGGGGCGCCU---AGACCCc-- -3'
miRNA:   3'- -CCAUU----UCUCGCGGGaugUCUGGGcug -5'
9879 5' -53.7 NC_002641.1 + 126821 0.66 0.968392
Target:  5'- uGGUAAgaggGGGGCGCCU---AGACCCc-- -3'
miRNA:   3'- -CCAUU----UCUCGCGGGaugUCUGGGcug -5'
9879 5' -53.7 NC_002641.1 + 126574 0.66 0.961814
Target:  5'- --aAGGGAGUGuUCCcGCcGACCCGGCu -3'
miRNA:   3'- ccaUUUCUCGC-GGGaUGuCUGGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 52208 0.66 0.961814
Target:  5'- aGGUAcuGAuaCGCCaguguCGGGCCCGGCg -3'
miRNA:   3'- -CCAUuuCUc-GCGGgau--GUCUGGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 155898 0.66 0.961814
Target:  5'- --aAGGGAGUGuUCCcGCcGACCCGGCu -3'
miRNA:   3'- ccaUUUCUCGC-GGGaUGuCUGGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 129860 0.66 0.958192
Target:  5'- cGGUGGGGucGGCGgUC-ACcGACCCGGCc -3'
miRNA:   3'- -CCAUUUC--UCGCgGGaUGuCUGGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 152613 0.66 0.958192
Target:  5'- cGGUGGGGucGGCGgUC-ACcGACCCGGCc -3'
miRNA:   3'- -CCAUUUC--UCGCgGGaUGuCUGGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 146969 0.67 0.941379
Target:  5'- cGGUugccGGGGAGCGgUCUugccgagcagGCAGACCCuGCa -3'
miRNA:   3'- -CCA----UUUCUCGCgGGA----------UGUCUGGGcUG- -5'
9879 5' -53.7 NC_002641.1 + 135504 0.67 0.941379
Target:  5'- cGGUugccGGGGAGCGgUCUugccgagcagGCAGACCCuGCa -3'
miRNA:   3'- -CCA----UUUCUCGCgGGA----------UGUCUGGGcUG- -5'
9879 5' -53.7 NC_002641.1 + 52932 0.69 0.896148
Target:  5'- aGUGGAuacaauGGC-CCCUGCAGcCCCGACu -3'
miRNA:   3'- cCAUUUc-----UCGcGGGAUGUCuGGGCUG- -5'
9879 5' -53.7 NC_002641.1 + 11888 0.71 0.792132
Target:  5'- cGGggGGGAGC-CCCU-CAGGCCgcCGACg -3'
miRNA:   3'- -CCauUUCUCGcGGGAuGUCUGG--GCUG- -5'
9879 5' -53.7 NC_002641.1 + 65069 0.73 0.684192
Target:  5'- --cAGAGGGUGCCCaACAGAUgCGAUa -3'
miRNA:   3'- ccaUUUCUCGCGGGaUGUCUGgGCUG- -5'
9879 5' -53.7 NC_002641.1 + 103966 1.13 0.002712
Target:  5'- cGGUAAAGAGCGCCCUACAGACCCGACa -3'
miRNA:   3'- -CCAUUUCUCGCGGGAUGUCUGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.