miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
988 5' -59.4 NC_000902.1 + 38659 0.66 0.49147
Target:  5'- ---cGGUCCcuGUGGGCCUgcc-GGGCc -3'
miRNA:   3'- uuguCCAGGu-CACCCGGGaguuCCCG- -5'
988 5' -59.4 NC_000902.1 + 38155 0.66 0.461654
Target:  5'- uGCAGGaCCAGguucaCCUCGGGGGCc -3'
miRNA:   3'- uUGUCCaGGUCacccgGGAGUUCCCG- -5'
988 5' -59.4 NC_000902.1 + 38536 0.69 0.336786
Target:  5'- uGCAGGUCCAcaGGGUCCa-AAGGGa -3'
miRNA:   3'- uUGUCCAGGUcaCCCGGGagUUCCCg -5'
988 5' -59.4 NC_000902.1 + 37853 0.71 0.250828
Target:  5'- ---cGGcCCuGcGGGCCCUUGAGGGCc -3'
miRNA:   3'- uuguCCaGGuCaCCCGGGAGUUCCCG- -5'
988 5' -59.4 NC_000902.1 + 38464 0.74 0.140534
Target:  5'- uGCuGGUCCGGcaGGCCCgCAGGGGCc -3'
miRNA:   3'- uUGuCCAGGUCacCCGGGaGUUCCCG- -5'
988 5' -59.4 NC_000902.1 + 38373 0.77 0.095552
Target:  5'- cAGCAGGUCCGGcUGGGCCg--AAGGGUg -3'
miRNA:   3'- -UUGUCCAGGUC-ACCCGGgagUUCCCG- -5'
988 5' -59.4 NC_000902.1 + 38616 0.8 0.051304
Target:  5'- cGGCAGGcCCGGUGGGggcgaccggaCCUCAGGGGCc -3'
miRNA:   3'- -UUGUCCaGGUCACCCg---------GGAGUUCCCG- -5'
988 5' -59.4 NC_000902.1 + 37756 1.08 0.000454
Target:  5'- aAACAGGUCCAGUGGGCCCUCAAGGGCc -3'
miRNA:   3'- -UUGUCCAGGUCACCCGGGAGUUCCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.