Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
988 | 5' | -59.4 | NC_000902.1 | + | 38659 | 0.66 | 0.49147 |
Target: 5'- ---cGGUCCcuGUGGGCCUgcc-GGGCc -3' miRNA: 3'- uuguCCAGGu-CACCCGGGaguuCCCG- -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 38155 | 0.66 | 0.461654 |
Target: 5'- uGCAGGaCCAGguucaCCUCGGGGGCc -3' miRNA: 3'- uUGUCCaGGUCacccgGGAGUUCCCG- -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 38536 | 0.69 | 0.336786 |
Target: 5'- uGCAGGUCCAcaGGGUCCa-AAGGGa -3' miRNA: 3'- uUGUCCAGGUcaCCCGGGagUUCCCg -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 37853 | 0.71 | 0.250828 |
Target: 5'- ---cGGcCCuGcGGGCCCUUGAGGGCc -3' miRNA: 3'- uuguCCaGGuCaCCCGGGAGUUCCCG- -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 38464 | 0.74 | 0.140534 |
Target: 5'- uGCuGGUCCGGcaGGCCCgCAGGGGCc -3' miRNA: 3'- uUGuCCAGGUCacCCGGGaGUUCCCG- -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 38373 | 0.77 | 0.095552 |
Target: 5'- cAGCAGGUCCGGcUGGGCCg--AAGGGUg -3' miRNA: 3'- -UUGUCCAGGUC-ACCCGGgagUUCCCG- -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 38616 | 0.8 | 0.051304 |
Target: 5'- cGGCAGGcCCGGUGGGggcgaccggaCCUCAGGGGCc -3' miRNA: 3'- -UUGUCCaGGUCACCCg---------GGAGUUCCCG- -5' |
|||||||
988 | 5' | -59.4 | NC_000902.1 | + | 37756 | 1.08 | 0.000454 |
Target: 5'- aAACAGGUCCAGUGGGCCCUCAAGGGCc -3' miRNA: 3'- -UUGUCCAGGUCACCCGGGAGUUCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home