miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9880 3' -51.9 NC_002641.1 + 97188 0.66 0.993128
Target:  5'- aUGUGGUugAUGGgcGGUUGcugauuaaGACGCGCGgCa -3'
miRNA:   3'- cGCACCA--UGCU--CCAAU--------UUGCGCGCgG- -5'
9880 3' -51.9 NC_002641.1 + 118130 0.66 0.989716
Target:  5'- uGCGUcauGGaucGCGGGGg--GACGC-CGCCg -3'
miRNA:   3'- -CGCA---CCa--UGCUCCaauUUGCGcGCGG- -5'
9880 3' -51.9 NC_002641.1 + 148736 0.66 0.989716
Target:  5'- gGCGUGuagagAUGGGGUagGAGCaGCagGCGCCg -3'
miRNA:   3'- -CGCACca---UGCUCCAa-UUUG-CG--CGCGG- -5'
9880 3' -51.9 NC_002641.1 + 133736 0.66 0.989716
Target:  5'- gGCGUGuagagAUGGGGUagGAGCaGCagGCGCCg -3'
miRNA:   3'- -CGCACca---UGCUCCAa-UUUG-CG--CGCGG- -5'
9880 3' -51.9 NC_002641.1 + 5592 0.66 0.989716
Target:  5'- uGCGUcauGGaucGCGGGGg--GACGC-CGCCg -3'
miRNA:   3'- -CGCA---CCa--UGCUCCaauUUGCGcGCGG- -5'
9880 3' -51.9 NC_002641.1 + 125475 0.67 0.985102
Target:  5'- cCGUGG-AC-AGGUUuAGCGCuuuuucucgccGCGCCg -3'
miRNA:   3'- cGCACCaUGcUCCAAuUUGCG-----------CGCGG- -5'
9880 3' -51.9 NC_002641.1 + 156998 0.67 0.985102
Target:  5'- cCGUGG-AC-AGGUUuAGCGCuuuuucucgccGCGCCg -3'
miRNA:   3'- cGCACCaUGcUCCAAuUUGCG-----------CGCGG- -5'
9880 3' -51.9 NC_002641.1 + 6198 0.67 0.981454
Target:  5'- aGCGgagGGUaaagACGcGGGUggggaucucccuccgGAcCGCGCGCCg -3'
miRNA:   3'- -CGCa--CCA----UGC-UCCAa--------------UUuGCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 116869 0.67 0.981454
Target:  5'- aGCGgagGGUaaagACGcGGGUggggaucucccuccgGAcCGCGCGCCg -3'
miRNA:   3'- -CGCa--CCA----UGC-UCCAa--------------UUuGCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 83037 0.67 0.981245
Target:  5'- cUGUGcaauucGUACGGacGGUUAGaAUGCGCGCUa -3'
miRNA:   3'- cGCAC------CAUGCU--CCAAUU-UGCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 134264 0.67 0.979057
Target:  5'- cGCGgggGGUGgGGGGauUUGuuaccuUGCGCGCUg -3'
miRNA:   3'- -CGCa--CCAUgCUCC--AAUuu----GCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 148208 0.67 0.979057
Target:  5'- cGCGgggGGUGgGGGGauUUGuuaccuUGCGCGCUg -3'
miRNA:   3'- -CGCa--CCAUgCUCC--AAUuu----GCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 56264 0.68 0.976685
Target:  5'- cCGUGGUGauguugaGuGGUUGGAacuagUGCGCGCg -3'
miRNA:   3'- cGCACCAUg------CuCCAAUUU-----GCGCGCGg -5'
9880 3' -51.9 NC_002641.1 + 109212 0.69 0.949837
Target:  5'- cGCGUcuccggaGGUgACGGGagUGAAUGUGCGCCc -3'
miRNA:   3'- -CGCA-------CCA-UGCUCcaAUUUGCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 153963 0.69 0.945939
Target:  5'- -gGUGGUGgcaagaauacacCGGGGggUAGuuucCGCGCGCCc -3'
miRNA:   3'- cgCACCAU------------GCUCCa-AUUu---GCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 128510 0.69 0.945939
Target:  5'- -gGUGGUGgcaagaauacacCGGGGggUAGuuucCGCGCGCCc -3'
miRNA:   3'- cgCACCAU------------GCUCCa-AUUu---GCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 142753 0.73 0.836051
Target:  5'- cGCGUGGUuuGuucucGGUaAAAUGUGUGCCa -3'
miRNA:   3'- -CGCACCAugCu----CCAaUUUGCGCGCGG- -5'
9880 3' -51.9 NC_002641.1 + 93279 0.73 0.818996
Target:  5'- gGCGUGGUAuuCGAuuGGaUUGAACGUGaCGUCa -3'
miRNA:   3'- -CGCACCAU--GCU--CC-AAUUUGCGC-GCGG- -5'
9880 3' -51.9 NC_002641.1 + 109445 1.15 0.003492
Target:  5'- uGCGUGGUACGAGGUUAAACGCGCGCCg -3'
miRNA:   3'- -CGCACCAUGCUCCAAUUUGCGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.