miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9881 3' -58 NC_002641.1 + 125149 0.66 0.856431
Target:  5'- cGGAuGGGuaaGCACgGCaCGGGCgggcaugaGCGGCu -3'
miRNA:   3'- aCUUuCUC---UGUGgCG-GCCCGa-------CGCCG- -5'
9881 3' -58 NC_002641.1 + 157324 0.66 0.856431
Target:  5'- cGGAuGGGuaaGCACgGCaCGGGCgggcaugaGCGGCu -3'
miRNA:   3'- aCUUuCUC---UGUGgCG-GCCCGa-------CGCCG- -5'
9881 3' -58 NC_002641.1 + 80414 0.66 0.840778
Target:  5'- cGggGGAuGuuuCACuCGCaaaCGGGCUGaUGGCa -3'
miRNA:   3'- aCuuUCU-Cu--GUG-GCG---GCCCGAC-GCCG- -5'
9881 3' -58 NC_002641.1 + 121189 0.66 0.840778
Target:  5'- ----uGAGACGCCGaCCaagaGGGCgaGUGGUg -3'
miRNA:   3'- acuuuCUCUGUGGC-GG----CCCGa-CGCCG- -5'
9881 3' -58 NC_002641.1 + 2533 0.66 0.840778
Target:  5'- ----uGAGACGCCGaCCaagaGGGCgaGUGGUg -3'
miRNA:   3'- acuuuCUCUGUGGC-GG----CCCGa-CGCCG- -5'
9881 3' -58 NC_002641.1 + 153736 0.66 0.815939
Target:  5'- ---uAGcGACACCGCgCGuGCcGCGGCg -3'
miRNA:   3'- acuuUCuCUGUGGCG-GCcCGaCGCCG- -5'
9881 3' -58 NC_002641.1 + 38261 0.67 0.789644
Target:  5'- gUGGAugcAGAuGCGCCGCCuauauccgGGGUgGUGGCa -3'
miRNA:   3'- -ACUU---UCUcUGUGGCGG--------CCCGaCGCCG- -5'
9881 3' -58 NC_002641.1 + 157061 0.67 0.765847
Target:  5'- cGAGAGAGGCccuucuuucgcuccuGCgCGCCGuuaGCgagcgGCGGCa -3'
miRNA:   3'- aCUUUCUCUG---------------UG-GCGGCc--CGa----CGCCG- -5'
9881 3' -58 NC_002641.1 + 125411 0.67 0.765847
Target:  5'- cGAGAGAGGCccuucuuucgcuccuGCgCGCCGuuaGCgagcgGCGGCa -3'
miRNA:   3'- aCUUUCUCUG---------------UG-GCGGCc--CGa----CGCCG- -5'
9881 3' -58 NC_002641.1 + 148806 0.68 0.743185
Target:  5'- cGAGuguGAGAgGa-GgCGGGUUGCGGCa -3'
miRNA:   3'- aCUUu--CUCUgUggCgGCCCGACGCCG- -5'
9881 3' -58 NC_002641.1 + 133666 0.68 0.743185
Target:  5'- cGAGuguGAGAgGa-GgCGGGUUGCGGCa -3'
miRNA:   3'- aCUUu--CUCUgUggCgGCCCGACGCCG- -5'
9881 3' -58 NC_002641.1 + 6180 0.68 0.73261
Target:  5'- gGguGGGGAucucccuccggacCGCgCGCCGGGC-GCGGUu -3'
miRNA:   3'- aCuuUCUCU-------------GUG-GCGGCCCGaCGCCG- -5'
9881 3' -58 NC_002641.1 + 116887 0.68 0.73261
Target:  5'- gGguGGGGAucucccuccggacCGCgCGCCGGGC-GCGGUu -3'
miRNA:   3'- aCuuUCUCU-------------GUG-GCGGCCCGaCGCCG- -5'
9881 3' -58 NC_002641.1 + 103047 0.68 0.723881
Target:  5'- ---cGGAGGCucCCGaUCGGGCgGCGGUu -3'
miRNA:   3'- acuuUCUCUGu-GGC-GGCCCGaCGCCG- -5'
9881 3' -58 NC_002641.1 + 9131 0.7 0.61105
Target:  5'- -cAAGGAGAugccguuccguuaaCACaucagguuaaugCGCCGGGCUGCaGGCa -3'
miRNA:   3'- acUUUCUCU--------------GUG------------GCGGCCCGACG-CCG- -5'
9881 3' -58 NC_002641.1 + 157684 0.7 0.604011
Target:  5'- gGGAAGGGAgCGauGCCGGcaGCUGUGGUg -3'
miRNA:   3'- aCUUUCUCU-GUggCGGCC--CGACGCCG- -5'
9881 3' -58 NC_002641.1 + 124788 0.71 0.573985
Target:  5'- cGGAAGGGAgCGauGCCGGcaGCUGUGGUg -3'
miRNA:   3'- aCUUUCUCU-GUggCGGCC--CGACGCCG- -5'
9881 3' -58 NC_002641.1 + 118144 0.76 0.319917
Target:  5'- -cGGGGGGACGCCGCCGcGGaccggucaaUGUGGCg -3'
miRNA:   3'- acUUUCUCUGUGGCGGC-CCg--------ACGCCG- -5'
9881 3' -58 NC_002641.1 + 5578 0.76 0.319917
Target:  5'- -cGGGGGGACGCCGCCGcGGaccggucaaUGUGGCg -3'
miRNA:   3'- acUUUCUCUGUGGCGGC-CCg--------ACGCCG- -5'
9881 3' -58 NC_002641.1 + 125476 0.79 0.211841
Target:  5'- aGGAAGGGcCGCCGCCGaGuccuacggcggcagaGCUGCGGCg -3'
miRNA:   3'- aCUUUCUCuGUGGCGGC-C---------------CGACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.