miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9881 5' -54 NC_002641.1 + 125323 0.66 0.964511
Target:  5'- -aAUUG-AACUCCGGAAGCgGCUUcaACUg -3'
miRNA:   3'- ucUAGCgUUGAGGCCUUCG-CGAG--UGG- -5'
9881 5' -54 NC_002641.1 + 157149 0.66 0.964511
Target:  5'- -aAUUG-AACUCCGGAAGCgGCUUcaACUg -3'
miRNA:   3'- ucUAGCgUUGAGGCCUUCG-CGAG--UGG- -5'
9881 5' -54 NC_002641.1 + 87910 0.66 0.961078
Target:  5'- ---cCGCAuACUCUGGAAGCGUUuCAa- -3'
miRNA:   3'- ucuaGCGU-UGAGGCCUUCGCGA-GUgg -5'
9881 5' -54 NC_002641.1 + 27199 0.66 0.957423
Target:  5'- cGGGUUGUAAUaaUCCaaauGGAucGCGCUCGCa -3'
miRNA:   3'- -UCUAGCGUUG--AGG----CCUu-CGCGAGUGg -5'
9881 5' -54 NC_002641.1 + 52927 0.66 0.953539
Target:  5'- aAGAUCagGCAACa-CGGAAGCcGCgUACCg -3'
miRNA:   3'- -UCUAG--CGUUGagGCCUUCG-CGaGUGG- -5'
9881 5' -54 NC_002641.1 + 157222 0.67 0.949424
Target:  5'- --cUCGCcGCUCCagcucGGccGcCGCUCGCCg -3'
miRNA:   3'- ucuAGCGuUGAGG-----CCuuC-GCGAGUGG- -5'
9881 5' -54 NC_002641.1 + 125250 0.67 0.949424
Target:  5'- --cUCGCcGCUCCagcucGGccGcCGCUCGCCg -3'
miRNA:   3'- ucuAGCGuUGAGG-----CCuuC-GCGAGUGG- -5'
9881 5' -54 NC_002641.1 + 65000 0.68 0.913912
Target:  5'- uGGAUUGCG----CGG-AGCGCUUACCa -3'
miRNA:   3'- -UCUAGCGUugagGCCuUCGCGAGUGG- -5'
9881 5' -54 NC_002641.1 + 138106 0.68 0.901591
Target:  5'- cAGGUCGguAUgagagCCGGGAG-GC-CGCCa -3'
miRNA:   3'- -UCUAGCguUGa----GGCCUUCgCGaGUGG- -5'
9881 5' -54 NC_002641.1 + 49916 0.68 0.895075
Target:  5'- -uGUCGCuACUCCGGAaAGCGCa---- -3'
miRNA:   3'- ucUAGCGuUGAGGCCU-UCGCGagugg -5'
9881 5' -54 NC_002641.1 + 83238 0.69 0.888325
Target:  5'- ---aCGCGACUCCaGGAgGGCGCgauCCg -3'
miRNA:   3'- ucuaGCGUUGAGG-CCU-UCGCGaguGG- -5'
9881 5' -54 NC_002641.1 + 70856 0.69 0.865207
Target:  5'- uAGA-CGaacaccaaaccGCUCCGGAGGCGCUUgaaauGCCg -3'
miRNA:   3'- -UCUaGCgu---------UGAGGCCUUCGCGAG-----UGG- -5'
9881 5' -54 NC_002641.1 + 40795 0.7 0.809117
Target:  5'- -uGUUGUAGCUgCGGAAGCcCUCGCa -3'
miRNA:   3'- ucUAGCGUUGAgGCCUUCGcGAGUGg -5'
9881 5' -54 NC_002641.1 + 117820 1.11 0.003364
Target:  5'- gAGAUCGCAACUCCGGAAGCGCUCACCc -3'
miRNA:   3'- -UCUAGCGUUGAGGCCUUCGCGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.