miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9883 3' -50.4 NC_002641.1 + 152791 0.66 0.997314
Target:  5'- --cGGUGACCGCcgacCCCAcCGaaccAACAGGa -3'
miRNA:   3'- cgaUUACUGGCG----GGGUaGCa---UUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 129682 0.66 0.997314
Target:  5'- --cGGUGACCGCcgacCCCAcCGaaccAACAGGa -3'
miRNA:   3'- cgaUUACUGGCG----GGGUaGCa---UUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 107437 0.66 0.997314
Target:  5'- cGCUAuUGACaucuauGCCCCGuucUCGgagaguggccGACAGGg -3'
miRNA:   3'- -CGAUuACUGg-----CGGGGU---AGCa---------UUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 117899 0.66 0.995634
Target:  5'- uGUUAuaGACCGCCCUAaacUCGcacuCGGGg -3'
miRNA:   3'- -CGAUuaCUGGCGGGGU---AGCauu-GUCC- -5'
9883 3' -50.4 NC_002641.1 + 5823 0.66 0.995634
Target:  5'- uGUUAuaGACCGCCCUAaacUCGcacuCGGGg -3'
miRNA:   3'- -CGAUuaCUGGCGGGGU---AGCauu-GUCC- -5'
9883 3' -50.4 NC_002641.1 + 75956 0.67 0.994912
Target:  5'- aCUGuUGGCgCGCCCCAgu---ACAGGa -3'
miRNA:   3'- cGAUuACUG-GCGGGGUagcauUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 77739 0.68 0.983161
Target:  5'- uCUAAgaaauagGGCCGuauucaacCCCCAUacaGUAACAGGa -3'
miRNA:   3'- cGAUUa------CUGGC--------GGGGUAg--CAUUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 3462 0.7 0.961227
Target:  5'- cGCUGGcGAgCCGCCCCccccuuUCGgaaaaaAACAGGa -3'
miRNA:   3'- -CGAUUaCU-GGCGGGGu-----AGCa-----UUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 120260 0.71 0.940252
Target:  5'- cGCUGGcGAgCCGCCCCccccuUCGgaaaaaAACAGGa -3'
miRNA:   3'- -CGAUUaCU-GGCGGGGu----AGCa-----UUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 86320 0.71 0.930137
Target:  5'- cGCUGAUGccuACUGCCgCAUCGgcGCAa- -3'
miRNA:   3'- -CGAUUAC---UGGCGGgGUAGCauUGUcc -5'
9883 3' -50.4 NC_002641.1 + 4866 0.72 0.924702
Target:  5'- --aAAUG--UGUCCCAUCGUAACGGGu -3'
miRNA:   3'- cgaUUACugGCGGGGUAGCAUUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 118856 0.72 0.924702
Target:  5'- --aAAUG--UGUCCCAUCGUAACGGGu -3'
miRNA:   3'- cgaUUACugGCGGGGUAGCAUUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 26452 0.74 0.823434
Target:  5'- ----uUGACCGCCCUAUCGgcAUcGGa -3'
miRNA:   3'- cgauuACUGGCGGGGUAGCauUGuCC- -5'
9883 3' -50.4 NC_002641.1 + 4649 1.15 0.005254
Target:  5'- cGCUAAUGACCGCCCCAUCGUAACAGGa -3'
miRNA:   3'- -CGAUUACUGGCGGGGUAGCAUUGUCC- -5'
9883 3' -50.4 NC_002641.1 + 119074 1.15 0.005254
Target:  5'- cGCUAAUGACCGCCCCAUCGUAACAGGa -3'
miRNA:   3'- -CGAUUACUGGCGGGGUAGCAUUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.