miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9884 3' -52.7 NC_002641.1 + 34169 0.66 0.985525
Target:  5'- ---uAUggCUGGAgaAGAGACCCaGCGGg -3'
miRNA:   3'- cacuUAaaGGCCU--UCUCUGGG-CGCCg -5'
9884 3' -52.7 NC_002641.1 + 136002 0.66 0.983713
Target:  5'- -gGAGUUUCCGGccaAGcCCCGCGa- -3'
miRNA:   3'- caCUUAAAGGCCuucUCuGGGCGCcg -5'
9884 3' -52.7 NC_002641.1 + 146470 0.66 0.983713
Target:  5'- -gGAGUUUCCGGccaAGcCCCGCGa- -3'
miRNA:   3'- caCUUAAAGGCCuucUCuGGGCGCcg -5'
9884 3' -52.7 NC_002641.1 + 39961 0.66 0.983713
Target:  5'- -aGAAUUUCCGaGAGAuauGCCCGCcauGCa -3'
miRNA:   3'- caCUUAAAGGCcUUCUc--UGGGCGc--CG- -5'
9884 3' -52.7 NC_002641.1 + 108702 0.66 0.977242
Target:  5'- uUGGAUUggCUGGAAGGGugcuaaCCGCauGGCa -3'
miRNA:   3'- cACUUAAa-GGCCUUCUCug----GGCG--CCG- -5'
9884 3' -52.7 NC_002641.1 + 4004 0.66 0.974714
Target:  5'- -aGGAc--CCGGAAGAGACgCGCcaGCa -3'
miRNA:   3'- caCUUaaaGGCCUUCUCUGgGCGc-CG- -5'
9884 3' -52.7 NC_002641.1 + 119718 0.66 0.974714
Target:  5'- -aGGAc--CCGGAAGAGACgCGCcaGCa -3'
miRNA:   3'- caCUUaaaGGCCUUCUCUGgGCGc-CG- -5'
9884 3' -52.7 NC_002641.1 + 123737 0.66 0.974714
Target:  5'- -aGAAUUUucccauucCCGGAc-AGACCCGCagccGGCa -3'
miRNA:   3'- caCUUAAA--------GGCCUucUCUGGGCG----CCG- -5'
9884 3' -52.7 NC_002641.1 + 93803 0.67 0.967193
Target:  5'- -aGAGUUUCCGaGGguuauuguggauacuAGuguGGCCCcGCGGCc -3'
miRNA:   3'- caCUUAAAGGC-CU---------------UCu--CUGGG-CGCCG- -5'
9884 3' -52.7 NC_002641.1 + 117746 0.67 0.962545
Target:  5'- aUGug-UUagGGGAGAGACCCGUgaucGGCa -3'
miRNA:   3'- cACuuaAAggCCUUCUCUGGGCG----CCG- -5'
9884 3' -52.7 NC_002641.1 + 11895 0.68 0.95514
Target:  5'- aUGAAg--CCGGggGGGAgCCCcucaGGCc -3'
miRNA:   3'- cACUUaaaGGCCuuCUCU-GGGcg--CCG- -5'
9884 3' -52.7 NC_002641.1 + 37606 0.68 0.951089
Target:  5'- cUGGAUUcaaaagCGGggGGGAUCCGCGuGUc -3'
miRNA:   3'- cACUUAAag----GCCuuCUCUGGGCGC-CG- -5'
9884 3' -52.7 NC_002641.1 + 158743 0.7 0.876355
Target:  5'- aGUGAAUagaauuuucccaUUCCGcGGAcAGACCCGCagccGGCa -3'
miRNA:   3'- -CACUUA------------AAGGC-CUUcUCUGGGCG----CCG- -5'
9884 3' -52.7 NC_002641.1 + 119936 1.13 0.003525
Target:  5'- cGUGAAUUUCCGGAAGAGACCCGCGGCa -3'
miRNA:   3'- -CACUUAAAGGCCUUCUCUGGGCGCCG- -5'
9884 3' -52.7 NC_002641.1 + 3787 1.13 0.003525
Target:  5'- cGUGAAUUUCCGGAAGAGACCCGCGGCa -3'
miRNA:   3'- -CACUUAAAGGCCUUCUCUGGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.