miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9884 5' -51 NC_002641.1 + 64157 0.66 0.9942
Target:  5'- ---aAGGuauCCUCCGUCCUGuuccccAAACCc -3'
miRNA:   3'- uuucUCCuuuGGAGGCAGGGC------UUUGG- -5'
9884 5' -51 NC_002641.1 + 66710 0.67 0.98846
Target:  5'- uAAAGGGGGAACUUCUG--CCGAAugUc -3'
miRNA:   3'- -UUUCUCCUUUGGAGGCagGGCUUugG- -5'
9884 5' -51 NC_002641.1 + 44641 0.67 0.986908
Target:  5'- --uGAGGAuguauuccGCCUuuGUUUCGAGAUCa -3'
miRNA:   3'- uuuCUCCUu-------UGGAggCAGGGCUUUGG- -5'
9884 5' -51 NC_002641.1 + 145991 0.67 0.985201
Target:  5'- --cGAGGGAACgUCCGaUUCGAggaaAGCCa -3'
miRNA:   3'- uuuCUCCUUUGgAGGCaGGGCU----UUGG- -5'
9884 5' -51 NC_002641.1 + 136482 0.67 0.985201
Target:  5'- --cGAGGGAACgUCCGaUUCGAggaaAGCCa -3'
miRNA:   3'- uuuCUCCUUUGgAGGCaGGGCU----UUGG- -5'
9884 5' -51 NC_002641.1 + 99249 0.68 0.979055
Target:  5'- aGAAGAGuugaGAAACCUCCGggaCCC---ACCa -3'
miRNA:   3'- -UUUCUC----CUUUGGAGGCa--GGGcuuUGG- -5'
9884 5' -51 NC_002641.1 + 128462 0.68 0.976636
Target:  5'- --cGGGGucGCCUagggCGUCCCG-GGCCa -3'
miRNA:   3'- uuuCUCCuuUGGAg---GCAGGGCuUUGG- -5'
9884 5' -51 NC_002641.1 + 12122 0.68 0.976636
Target:  5'- -uAGAGGGAuauACCUCuuCGUaaCGAAGCCu -3'
miRNA:   3'- uuUCUCCUU---UGGAG--GCAggGCUUUGG- -5'
9884 5' -51 NC_002641.1 + 154011 0.68 0.976636
Target:  5'- --cGGGGucGCCUagggCGUCCCG-GGCCa -3'
miRNA:   3'- uuuCUCCuuUGGAg---GCAGGGCuUUGG- -5'
9884 5' -51 NC_002641.1 + 132681 0.68 0.973744
Target:  5'- uGGGGAGGAugccggggacucuGACCgUCCGUCCgGggGu- -3'
miRNA:   3'- -UUUCUCCU-------------UUGG-AGGCAGGgCuuUgg -5'
9884 5' -51 NC_002641.1 + 149792 0.68 0.973744
Target:  5'- uGGGGAGGAugccggggacucuGACCgUCCGUCCgGggGu- -3'
miRNA:   3'- -UUUCUCCU-------------UUGG-AGGCAGGgCuuUgg -5'
9884 5' -51 NC_002641.1 + 130901 0.7 0.944625
Target:  5'- -cAGAGGAGAcaaucccccccguCCUCUcggccgcaGUCCaCGAAGCCg -3'
miRNA:   3'- uuUCUCCUUU-------------GGAGG--------CAGG-GCUUUGG- -5'
9884 5' -51 NC_002641.1 + 151572 0.7 0.944625
Target:  5'- -cAGAGGAGAcaaucccccccguCCUCUcggccgcaGUCCaCGAAGCCg -3'
miRNA:   3'- uuUCUCCUUU-------------GGAGG--------CAGG-GCUUUGG- -5'
9884 5' -51 NC_002641.1 + 56535 0.7 0.93544
Target:  5'- --uGGGGAuggcuAGCuUUCCGUCCCGAcgacGCCg -3'
miRNA:   3'- uuuCUCCU-----UUG-GAGGCAGGGCUu---UGG- -5'
9884 5' -51 NC_002641.1 + 98851 0.7 0.93024
Target:  5'- cGAGAGGA--CCUCCGacCCCGccuucGAACCc -3'
miRNA:   3'- uUUCUCCUuuGGAGGCa-GGGC-----UUUGG- -5'
9884 5' -51 NC_002641.1 + 151694 0.7 0.926998
Target:  5'- --cGAGcGGAACCggcgggaaggaaaUGUCCCGGAGCCa -3'
miRNA:   3'- uuuCUC-CUUUGGag-----------GCAGGGCUUUGG- -5'
9884 5' -51 NC_002641.1 + 130778 0.7 0.926998
Target:  5'- --cGAGcGGAACCggcgggaaggaaaUGUCCCGGAGCCa -3'
miRNA:   3'- uuuCUC-CUUUGGag-----------GCAGGGCUUUGG- -5'
9884 5' -51 NC_002641.1 + 11888 0.72 0.854216
Target:  5'- cGGGGGGGAGCCccucaggccgCCGacguuuucuaggucUCCCGAGGCCu -3'
miRNA:   3'- uUUCUCCUUUGGa---------GGC--------------AGGGCUUUGG- -5'
9884 5' -51 NC_002641.1 + 10605 0.74 0.767296
Target:  5'- aGGAGAGGggGCCUCCcaUCCCaGGuuugucgcAGCCg -3'
miRNA:   3'- -UUUCUCCuuUGGAGGc-AGGG-CU--------UUGG- -5'
9884 5' -51 NC_002641.1 + 119893 1.09 0.008805
Target:  5'- aAAAGAGGAAACCUCCGUCCCGAAACCc -3'
miRNA:   3'- -UUUCUCCUUUGGAGGCAGGGCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.