miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9886 3' -48.5 NC_002641.1 + 125462 0.66 0.998752
Target:  5'- cCGAGUCCUaCGGcg-GCAgAGCUGc -3'
miRNA:   3'- aGCUUAGGAcGCCuaaUGUaUCGACa -5'
9886 3' -48.5 NC_002641.1 + 157010 0.66 0.998752
Target:  5'- cCGAGUCCUaCGGcg-GCAgAGCUGc -3'
miRNA:   3'- aGCUUAGGAcGCCuaaUGUaUCGACa -5'
9886 3' -48.5 NC_002641.1 + 82675 0.67 0.997804
Target:  5'- uUCGAGUCUaGCGGAgaUACAU-GCUa- -3'
miRNA:   3'- -AGCUUAGGaCGCCUa-AUGUAuCGAca -5'
9886 3' -48.5 NC_002641.1 + 61241 0.68 0.996317
Target:  5'- gUCGGAauUCgUGCGGA--ACGUggcGGCUGUu -3'
miRNA:   3'- -AGCUU--AGgACGCCUaaUGUA---UCGACA- -5'
9886 3' -48.5 NC_002641.1 + 50466 0.69 0.986428
Target:  5'- aCGAucAUCCgGCGGugUAUGUGGCUGg -3'
miRNA:   3'- aGCU--UAGGaCGCCuaAUGUAUCGACa -5'
9886 3' -48.5 NC_002641.1 + 121651 0.71 0.969776
Target:  5'- -aGAucCCUGCGGAcaAUGUAGCUGUu -3'
miRNA:   3'- agCUuaGGACGCCUaaUGUAUCGACA- -5'
9886 3' -48.5 NC_002641.1 + 2071 0.71 0.969776
Target:  5'- -aGAucCCUGCGGAcaAUGUAGCUGUu -3'
miRNA:   3'- agCUuaGGACGCCUaaUGUAUCGACA- -5'
9886 3' -48.5 NC_002641.1 + 32281 0.72 0.955419
Target:  5'- uUUGAaacGUUCUGUGGcg-ACAUGGCUGUg -3'
miRNA:   3'- -AGCU---UAGGACGCCuaaUGUAUCGACA- -5'
9886 3' -48.5 NC_002641.1 + 1755 0.77 0.76471
Target:  5'- -aGAAUCCcGCGGAcaACGUAGCUGc -3'
miRNA:   3'- agCUUAGGaCGCCUaaUGUAUCGACa -5'
9886 3' -48.5 NC_002641.1 + 121968 0.77 0.76471
Target:  5'- -aGAAUCCcGCGGAcaACGUAGCUGc -3'
miRNA:   3'- agCUUAGGaCGCCUaaUGUAUCGACa -5'
9886 3' -48.5 NC_002641.1 + 121336 1.08 0.016844
Target:  5'- cUCGAAUCCUGCGGAUUACAUAGCUGUu -3'
miRNA:   3'- -AGCUUAGGACGCCUAAUGUAUCGACA- -5'
9886 3' -48.5 NC_002641.1 + 2386 1.08 0.016844
Target:  5'- cUCGAAUCCUGCGGAUUACAUAGCUGUu -3'
miRNA:   3'- -AGCUUAGGACGCCUAAUGUAUCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.