miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9887 5' -52.1 NC_002641.1 + 155772 0.66 0.98531
Target:  5'- uCACca--CGGGGGUgCCAUGGGGAu- -3'
miRNA:   3'- uGUGuugaGCCCCCA-GGUACUCUUuc -5'
9887 5' -52.1 NC_002641.1 + 126701 0.66 0.98531
Target:  5'- uCACca--CGGGGGUgCCAUGGGGAu- -3'
miRNA:   3'- uGUGuugaGCCCCCA-GGUACUCUUuc -5'
9887 5' -52.1 NC_002641.1 + 5803 0.68 0.954208
Target:  5'- uCGC-ACUCGGGGGUCCGgccgcgcccAGAcAGg -3'
miRNA:   3'- uGUGuUGAGCCCCCAGGUac-------UCUuUC- -5'
9887 5' -52.1 NC_002641.1 + 117919 0.68 0.954208
Target:  5'- uCGC-ACUCGGGGGUCCGgccgcgcccAGAcAGg -3'
miRNA:   3'- uGUGuUGAGCCCCCAGGUac-------UCUuUC- -5'
9887 5' -52.1 NC_002641.1 + 7025 0.68 0.950058
Target:  5'- --cCAGCUCGGGGGggaguagcUCCAucaaaUGuGAGAGg -3'
miRNA:   3'- uguGUUGAGCCCCC--------AGGU-----ACuCUUUC- -5'
9887 5' -52.1 NC_002641.1 + 147171 0.75 0.668444
Target:  5'- uCACuuccuCUCGuGGGGUCCggGAGGAAGu -3'
miRNA:   3'- uGUGuu---GAGC-CCCCAGGuaCUCUUUC- -5'
9887 5' -52.1 NC_002641.1 + 135302 0.75 0.668444
Target:  5'- uCACuuccuCUCGuGGGGUCCggGAGGAAGu -3'
miRNA:   3'- uGUGuu---GAGC-CCCCAGGuaCUCUUUC- -5'
9887 5' -52.1 NC_002641.1 + 121788 0.75 0.657987
Target:  5'- gACACAcCUCGGcGGUCCAUaAGAAAGu -3'
miRNA:   3'- -UGUGUuGAGCCcCCAGGUAcUCUUUC- -5'
9887 5' -52.1 NC_002641.1 + 1935 0.75 0.657987
Target:  5'- gACACAcCUCGGcGGUCCAUaAGAAAGu -3'
miRNA:   3'- -UGUGUuGAGCCcCCAGGUAcUCUUUC- -5'
9887 5' -52.1 NC_002641.1 + 2254 1.09 0.00746
Target:  5'- gACACAACUCGGGGGUCCAUGAGAAAGu -3'
miRNA:   3'- -UGUGUUGAGCCCCCAGGUACUCUUUC- -5'
9887 5' -52.1 NC_002641.1 + 121468 1.09 0.00746
Target:  5'- gACACAACUCGGGGGUCCAUGAGAAAGu -3'
miRNA:   3'- -UGUGUUGAGCCCCCAGGUACUCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.