miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9888 5' -51.4 NC_002641.1 + 67265 0.66 0.986908
Target:  5'- -aGCGCCaUCGGCGGUggcaaaagaaaaUCA-AAGAAAGa -3'
miRNA:   3'- ugUGUGG-AGCCGCCA------------GGUaUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 5983 0.67 0.985201
Target:  5'- aAC-CGCCccggCGcGCGGUCCG-GAGGGAGa -3'
miRNA:   3'- -UGuGUGGa---GC-CGCCAGGUaUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 131658 0.68 0.974018
Target:  5'- uCACgGCCUCGGCGG-CCAgcuGAu-- -3'
miRNA:   3'- uGUG-UGGAGCCGCCaGGUauuCUuuc -5'
9888 5' -51.4 NC_002641.1 + 150815 0.68 0.974018
Target:  5'- uCACgGCCUCGGCGG-CCAgcuGAu-- -3'
miRNA:   3'- uGUG-UGGAGCCGCCaGGUauuCUuuc -5'
9888 5' -51.4 NC_002641.1 + 88363 0.68 0.964894
Target:  5'- gGCGCACa--GGCGGUCUGUGcuGGAGu- -3'
miRNA:   3'- -UGUGUGgagCCGCCAGGUAU--UCUUuc -5'
9888 5' -51.4 NC_002641.1 + 77650 0.69 0.940388
Target:  5'- -gACAUCa-GGCGGUUCAUuAGAGAGa -3'
miRNA:   3'- ugUGUGGagCCGCCAGGUAuUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 4588 0.7 0.913115
Target:  5'- cACACAacCCUUaGUGGUCCGccuUGAGAGAGu -3'
miRNA:   3'- -UGUGU--GGAGcCGCCAGGU---AUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 119134 0.7 0.913115
Target:  5'- cACACAacCCUUaGUGGUCCGccuUGAGAGAGu -3'
miRNA:   3'- -UGUGU--GGAGcCGCCAGGU---AUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 117083 0.73 0.814147
Target:  5'- cCGCGCCcggCGcGCGGUCCG-GAGGGAGa -3'
miRNA:   3'- uGUGUGGa--GC-CGCCAGGUaUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 2254 0.89 0.148031
Target:  5'- gACACAaCUCGGgGGUCCAUGAGAAAGu -3'
miRNA:   3'- -UGUGUgGAGCCgCCAGGUAUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 121468 0.89 0.148031
Target:  5'- gACACAaCUCGGgGGUCCAUGAGAAAGu -3'
miRNA:   3'- -UGUGUgGAGCCgCCAGGUAUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 121788 1.09 0.008557
Target:  5'- gACACACCUCGGCGGUCCAUAAGAAAGu -3'
miRNA:   3'- -UGUGUGGAGCCGCCAGGUAUUCUUUC- -5'
9888 5' -51.4 NC_002641.1 + 1935 1.09 0.008557
Target:  5'- gACACACCUCGGCGGUCCAUAAGAAAGu -3'
miRNA:   3'- -UGUGUGGAGCCGCCAGGUAUUCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.