Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9890 | 3' | -53.1 | NC_002641.1 | + | 5129 | 0.66 | 0.966645 |
Target: 5'- uGAAugCCuauGCGGGCg--GUGGCa-- -3' miRNA: 3'- uCUUugGGu--CGCCCGuuaCAUCGaca -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 118594 | 0.66 | 0.966645 |
Target: 5'- uGAAugCCuauGCGGGCg--GUGGCa-- -3' miRNA: 3'- uCUUugGGu--CGCCCGuuaCAUCGaca -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 83827 | 0.66 | 0.959666 |
Target: 5'- cGGGAACauauaCGGaggaucuGGGCAGUGUGGuCUGUu -3' miRNA: 3'- -UCUUUGg----GUCg------CCCGUUACAUC-GACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 91080 | 0.68 | 0.9037 |
Target: 5'- cAGAcaAACCCGGCauccugguuagaGGGCAGgugGGCUGg -3' miRNA: 3'- -UCU--UUGGGUCG------------CCCGUUacaUCGACa -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 99912 | 0.69 | 0.89025 |
Target: 5'- uGGAACaaaUAGCcagacgaacgGGGCGcgGUAGCUGUa -3' miRNA: 3'- uCUUUGg--GUCG----------CCCGUuaCAUCGACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 50467 | 0.69 | 0.86827 |
Target: 5'- cGAucAUCCGGCGGuGU-AUGUGGCUGg -3' miRNA: 3'- uCUu-UGGGUCGCC-CGuUACAUCGACa -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 121652 | 0.75 | 0.564619 |
Target: 5'- uAGAu-CCCuGCGGaCAAUGUAGCUGUu -3' miRNA: 3'- -UCUuuGGGuCGCCcGUUACAUCGACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 2070 | 0.75 | 0.564619 |
Target: 5'- uAGAu-CCCuGCGGaCAAUGUAGCUGUu -3' miRNA: 3'- -UCUuuGGGuCGCCcGUUACAUCGACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 121971 | 0.8 | 0.303233 |
Target: 5'- cGGAcucAUUCAGCGGGCAAUGUAGaCUGUg -3' miRNA: 3'- uCUU---UGGGUCGCCCGUUACAUC-GACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 1751 | 0.8 | 0.303233 |
Target: 5'- cGGAcucAUUCAGCGGGCAAUGUAGaCUGUg -3' miRNA: 3'- uCUU---UGGGUCGCCCGUUACAUC-GACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 122476 | 0.98 | 0.023275 |
Target: 5'- cAGAAACCCAGCGGGCAAcGUGGCUGUu -3' miRNA: 3'- -UCUUUGGGUCGCCCGUUaCAUCGACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 1246 | 0.98 | 0.023275 |
Target: 5'- cAGAAACCCAGCGGGCAAcGUGGCUGUu -3' miRNA: 3'- -UCUUUGGGUCGCCCGUUaCAUCGACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 1527 | 1.07 | 0.006258 |
Target: 5'- cAGAAACCCAGCGGGCAAUGUAGCUGUc -3' miRNA: 3'- -UCUUUGGGUCGCCCGUUACAUCGACA- -5' |
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9890 | 3' | -53.1 | NC_002641.1 | + | 122196 | 1.07 | 0.006258 |
Target: 5'- cAGAAACCCAGCGGGCAAUGUAGCUGUc -3' miRNA: 3'- -UCUUUGGGUCGCCCGUUACAUCGACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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