miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9891 5' -46.6 NC_002641.1 + 38264 0.66 0.999933
Target:  5'- gAUGCA---GAUGCGCCgccuauaUCCGGGGu -3'
miRNA:   3'- -UGCGUuuuUUAUGCGGaca----AGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 149563 0.66 0.999883
Target:  5'- gAUGCGGGAGAggAUGCgUGUU-CGAGAu -3'
miRNA:   3'- -UGCGUUUUUUa-UGCGgACAAgGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 132910 0.66 0.999883
Target:  5'- gAUGCGGGAGAggAUGCgUGUU-CGAGAu -3'
miRNA:   3'- -UGCGUUUUUUa-UGCGgACAAgGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 1585 0.67 0.999676
Target:  5'- -aGCAgcAAAGAUACGCaUGggCUGAGGg -3'
miRNA:   3'- ugCGU--UUUUUAUGCGgACaaGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 122137 0.67 0.999676
Target:  5'- -aGCAgcAAAGAUACGCaUGggCUGAGGg -3'
miRNA:   3'- ugCGU--UUUUUAUGCGgACaaGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 49137 0.68 0.999485
Target:  5'- -gGCGGccGAUGCaGCCUGUU-CGAGAu -3'
miRNA:   3'- ugCGUUuuUUAUG-CGGACAAgGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 120779 0.68 0.999357
Target:  5'- uACGCAAGAAa---GCCUug-CCGAGAc -3'
miRNA:   3'- -UGCGUUUUUuaugCGGAcaaGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 2944 0.68 0.999357
Target:  5'- uACGCAAGAAa---GCCUug-CCGAGAc -3'
miRNA:   3'- -UGCGUUUUUuaugCGGAcaaGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 62196 0.69 0.998535
Target:  5'- aGCGCGAucGGUaucgGCGgaCUGUUUCGAGAu -3'
miRNA:   3'- -UGCGUUuuUUA----UGCg-GACAAGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 140694 0.69 0.998226
Target:  5'- gGCGgGAGugGUAUGCCcgGUUCCG-GAu -3'
miRNA:   3'- -UGCgUUUuuUAUGCGGa-CAAGGCuCU- -5'
9891 5' -46.6 NC_002641.1 + 40800 0.78 0.82871
Target:  5'- cAUGCuacAGAUAgGCCUGUUUCGAGAa -3'
miRNA:   3'- -UGCGuuuUUUAUgCGGACAAGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 122286 1.1 0.020819
Target:  5'- uACGCAAAAAAUACGCCUGUUCCGAGAg -3'
miRNA:   3'- -UGCGUUUUUUAUGCGGACAAGGCUCU- -5'
9891 5' -46.6 NC_002641.1 + 1436 1.1 0.020819
Target:  5'- uACGCAAAAAAUACGCCUGUUCCGAGAg -3'
miRNA:   3'- -UGCGUUUUUUAUGCGGACAAGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.