miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9892 3' -48.6 NC_002641.1 + 102444 0.67 0.997525
Target:  5'- gACCUGUUAuauagaaGAUCGGGaucgccGCUGUcUAcGCg -3'
miRNA:   3'- -UGGACAGU-------UUAGCCC------CGACAaAUaCG- -5'
9892 3' -48.6 NC_002641.1 + 128895 0.68 0.99596
Target:  5'- gGCUcGUCgGGGUCGGGGCUcgc-AUGCg -3'
miRNA:   3'- -UGGaCAG-UUUAGCCCCGAcaaaUACG- -5'
9892 3' -48.6 NC_002641.1 + 153577 0.68 0.99596
Target:  5'- gGCUcGUCgGGGUCGGGGCUcgc-AUGCg -3'
miRNA:   3'- -UGGaCAG-UUUAGCCCCGAcaaaUACG- -5'
9892 3' -48.6 NC_002641.1 + 108685 0.69 0.991424
Target:  5'- aACCgagucagGUCGAAUUGGauuGGCUGgaaggGUGCu -3'
miRNA:   3'- -UGGa------CAGUUUAGCC---CCGACaaa--UACG- -5'
9892 3' -48.6 NC_002641.1 + 154381 0.69 0.990157
Target:  5'- uGCCUGaCGAggCGGGcGCUGaUUUAcGCu -3'
miRNA:   3'- -UGGACaGUUuaGCCC-CGAC-AAAUaCG- -5'
9892 3' -48.6 NC_002641.1 + 128091 0.69 0.990157
Target:  5'- uGCCUGaCGAggCGGGcGCUGaUUUAcGCu -3'
miRNA:   3'- -UGGACaGUUuaGCCC-CGAC-AAAUaCG- -5'
9892 3' -48.6 NC_002641.1 + 140538 0.74 0.898084
Target:  5'- aGCCUGUgGAuacUCGGGGCUGcagauaucUGCa -3'
miRNA:   3'- -UGGACAgUUu--AGCCCCGACaaau----ACG- -5'
9892 3' -48.6 NC_002641.1 + 1340 0.77 0.779917
Target:  5'- aACCcuUCAuGUCGGGGgUGUUUGUGUg -3'
miRNA:   3'- -UGGacAGUuUAGCCCCgACAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 122383 0.77 0.779917
Target:  5'- aACCcuUCAuGUCGGGGgUGUUUGUGUg -3'
miRNA:   3'- -UGGacAGUuUAGCCCCgACAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 122547 0.77 0.749947
Target:  5'- aGCCcuUCAcGUCGGGGgUGUUUGUGUg -3'
miRNA:   3'- -UGGacAGUuUAGCCCCgACAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 1176 0.77 0.749947
Target:  5'- aGCCcuUCAcGUCGGGGgUGUUUGUGUg -3'
miRNA:   3'- -UGGacAGUuUAGCCCCgACAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 1116 1 0.050359
Target:  5'- aACCUGUCAAAUCGGGGCUaUUUAUGCu -3'
miRNA:   3'- -UGGACAGUUUAGCCCCGAcAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 122606 1 0.050359
Target:  5'- aACCUGUCAAAUCGGGGCUaUUUAUGCu -3'
miRNA:   3'- -UGGACAGUUUAGCCCCGAcAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 122770 1.13 0.008832
Target:  5'- aACCUGUCAAAUCGGGGCUGUUUAUGCu -3'
miRNA:   3'- -UGGACAGUUUAGCCCCGACAAAUACG- -5'
9892 3' -48.6 NC_002641.1 + 953 1.13 0.008832
Target:  5'- aACCUGUCAAAUCGGGGCUGUUUAUGCu -3'
miRNA:   3'- -UGGACAGUUUAGCCCCGACAAAUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.