Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9892 | 5' | -52.1 | NC_002641.1 | + | 989 | 0.98 | 0.040992 |
Target: 5'- aACACACAAA-ACCCCCGACGUGAAGGg -3' miRNA: 3'- -UGUGUGUUUgUGGGGGCUGCACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 1138 | 0.71 | 0.892783 |
Target: 5'- -aGCAUAAACAgCCCCGAUuUGAcAGGu -3' miRNA: 3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 1152 | 1.01 | 0.027045 |
Target: 5'- aACACACAAACACCCCCGACaUGAAGGg -3' miRNA: 3'- -UGUGUGUUUGUGGGGGCUGcACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 1302 | 0.67 | 0.977983 |
Target: 5'- -aGCAUAAAUAgCCCCGAUuUGAcAGGu -3' miRNA: 3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 10753 | 0.69 | 0.943761 |
Target: 5'- uGCGCGgAGAUACCgUCGGCGUacGGGa -3' miRNA: 3'- -UGUGUgUUUGUGGgGGCUGCAcuUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 46705 | 0.7 | 0.928968 |
Target: 5'- aGCGCugGcGCAUUCUCGACGUGAc-- -3' miRNA: 3'- -UGUGugUuUGUGGGGGCUGCACUucc -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 68406 | 0.66 | 0.988248 |
Target: 5'- uGCGauagaaAUGGACaACCCCCcuaccgugaauaaucGGCGUGGAGGa -3' miRNA: 3'- -UGUg-----UGUUUG-UGGGGG---------------CUGCACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 84299 | 0.66 | 0.986042 |
Target: 5'- cCGCACuacACACCaCgCCGcucuCGUGGAGGc -3' miRNA: 3'- uGUGUGuu-UGUGG-G-GGCu---GCACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 85543 | 0.7 | 0.905814 |
Target: 5'- uACACACAAACGCCCgUCGGCc---GGGa -3' miRNA: 3'- -UGUGUGUUUGUGGG-GGCUGcacuUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 103794 | 0.67 | 0.972857 |
Target: 5'- -gGCGCucuuUACCgaCCGugGUGggGGg -3' miRNA: 3'- ugUGUGuuu-GUGGg-GGCugCACuuCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 111488 | 0.67 | 0.975518 |
Target: 5'- cUACACGugacuAACACCCCCGAauauuagucauaUGUGAGu- -3' miRNA: 3'- uGUGUGU-----UUGUGGGGGCU------------GCACUUcc -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 120260 | 0.66 | 0.991391 |
Target: 5'- cGCugGCGAGcCGCCCCCcccuucgGAaaaaaacaggaugUGUGGAGGc -3' miRNA: 3'- -UGugUGUUU-GUGGGGG-------CU-------------GCACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 122421 | 0.67 | 0.977983 |
Target: 5'- -aGCAUAAAUAgCCCCGAUuUGAcAGGu -3' miRNA: 3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 122570 | 1.01 | 0.027045 |
Target: 5'- aACACACAAACACCCCCGACaUGAAGGg -3' miRNA: 3'- -UGUGUGUUUGUGGGGGCUGcACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 122585 | 0.71 | 0.892783 |
Target: 5'- -aGCAUAAACAgCCCCGAUuUGAcAGGu -3' miRNA: 3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 122734 | 1.12 | 0.005478 |
Target: 5'- aACACACAAACACCCCCGACGUGAAGGg -3' miRNA: 3'- -UGUGUGUUUGUGGGGGCUGCACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 126878 | 0.71 | 0.878815 |
Target: 5'- cCAU---GGCACCCCCGugGUGAucaacguucccgAGGg -3' miRNA: 3'- uGUGuguUUGUGGGGGCugCACU------------UCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 126947 | 0.67 | 0.98026 |
Target: 5'- gGCGCAauaGAACACCgCCGAgGU--AGGc -3' miRNA: 3'- -UGUGUg--UUUGUGGgGGCUgCAcuUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 128059 | 0.69 | 0.943761 |
Target: 5'- aAUugGCu-GCAUaugCCCCGcCGUGAGGGg -3' miRNA: 3'- -UGugUGuuUGUG---GGGGCuGCACUUCC- -5' |
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9892 | 5' | -52.1 | NC_002641.1 | + | 131896 | 0.68 | 0.955995 |
Target: 5'- cGCACAUAAACaaagcugGCUCCCGcCGUcugaGAGGGc -3' miRNA: 3'- -UGUGUGUUUG-------UGGGGGCuGCA----CUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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