Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9892 | 5' | -52.1 | NC_002641.1 | + | 46705 | 0.7 | 0.928968 |
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Target: 5'- aGCGCugGcGCAUUCUCGACGUGAc-- -3' miRNA: 3'- -UGUGugUuUGUGGGGGCUGCACUucc -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 85543 | 0.7 | 0.905814 |
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Target: 5'- uACACACAAACGCCCgUCGGCc---GGGa -3' miRNA: 3'- -UGUGUGUUUGUGGG-GGCUGcacuUCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 122585 | 0.71 | 0.892783 |
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Target: 5'- -aGCAUAAACAgCCCCGAUuUGAcAGGu -3' miRNA: 3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 1138 | 0.71 | 0.892783 |
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Target: 5'- -aGCAUAAACAgCCCCGAUuUGAcAGGu -3' miRNA: 3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 155595 | 0.71 | 0.878815 |
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Target: 5'- cCAU---GGCACCCCCGugGUGAucaacguucccgAGGg -3' miRNA: 3'- uGUGuguUUGUGGGGGCugCACU------------UCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 126878 | 0.71 | 0.878815 |
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Target: 5'- cCAU---GGCACCCCCGugGUGAucaacguucccgAGGg -3' miRNA: 3'- uGUGuguUUGUGGGGGCugCACU------------UCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 989 | 0.98 | 0.040992 |
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Target: 5'- aACACACAAA-ACCCCCGACGUGAAGGg -3' miRNA: 3'- -UGUGUGUUUgUGGGGGCUGCACUUCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 1152 | 1.01 | 0.027045 |
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Target: 5'- aACACACAAACACCCCCGACaUGAAGGg -3' miRNA: 3'- -UGUGUGUUUGUGGGGGCUGcACUUCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 122570 | 1.01 | 0.027045 |
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Target: 5'- aACACACAAACACCCCCGACaUGAAGGg -3' miRNA: 3'- -UGUGUGUUUGUGGGGGCUGcACUUCC- -5' |
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| 9892 | 5' | -52.1 | NC_002641.1 | + | 122734 | 1.12 | 0.005478 |
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Target: 5'- aACACACAAACACCCCCGACGUGAAGGg -3' miRNA: 3'- -UGUGUGUUUGUGGGGGCUGCACUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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