miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9894 3' -52.4 NC_002641.1 + 149768 0.69 0.921781
Target:  5'- cGGCAGCGGCaGCg--ACGAAGAUGa-- -3'
miRNA:   3'- -CCGUUGCCG-CGacaUGCUUUUGCcga -5'
9894 3' -52.4 NC_002641.1 + 42483 0.66 0.983876
Target:  5'- uGUcGCGGCGggGgAUGAAAugGGCUu -3'
miRNA:   3'- cCGuUGCCGCgaCaUGCUUUugCCGA- -5'
9894 3' -52.4 NC_002641.1 + 125215 0.66 0.985682
Target:  5'- cGCuAACGGCGCgcagGaGCGAAAGaagGGCc -3'
miRNA:   3'- cCG-UUGCCGCGa---CaUGCUUUUg--CCGa -5'
9894 3' -52.4 NC_002641.1 + 109747 0.66 0.987329
Target:  5'- uGGCAu--GUGCUGcGCGAGAAuCGGUa -3'
miRNA:   3'- -CCGUugcCGCGACaUGCUUUU-GCCGa -5'
9894 3' -52.4 NC_002641.1 + 157215 1.11 0.00524
Target:  5'- uGGCAACGGCGCUGUACGAAAACGGCUg -3'
miRNA:   3'- -CCGUUGCCGCGACAUGCUUUUGCCGA- -5'
9894 3' -52.4 NC_002641.1 + 145717 0.73 0.754508
Target:  5'- uGGCGuCGGCGC-GUACc--GACGGCUg -3'
miRNA:   3'- -CCGUuGCCGCGaCAUGcuuUUGCCGA- -5'
9894 3' -52.4 NC_002641.1 + 157039 0.7 0.890438
Target:  5'- aGCGGCGGCcgaGCUGgagcgGCGAGAGaGGCc -3'
miRNA:   3'- cCGUUGCCG---CGACa----UGCUUUUgCCGa -5'
9894 3' -52.4 NC_002641.1 + 153559 0.7 0.897192
Target:  5'- cGGCAcgcGCGGUgucGCUaGUaGCGGAAGCGGUc -3'
miRNA:   3'- -CCGU---UGCCG---CGA-CA-UGCUUUUGCCGa -5'
9894 3' -52.4 NC_002641.1 + 49707 0.7 0.909977
Target:  5'- uGCAGCGGCaGCauUGUugGGGAG-GGCa -3'
miRNA:   3'- cCGUUGCCG-CG--ACAugCUUUUgCCGa -5'
9894 3' -52.4 NC_002641.1 + 12634 0.66 0.983876
Target:  5'- uGGgGAUGGaGCUGUucaacuuCGGGcGCGGCUg -3'
miRNA:   3'- -CCgUUGCCgCGACAu------GCUUuUGCCGA- -5'
9894 3' -52.4 NC_002641.1 + 122210 0.67 0.974632
Target:  5'- uGUAGCGGcCGUUGUACGGGAAgagugccCGaGCg -3'
miRNA:   3'- cCGUUGCC-GCGACAUGCUUUU-------GC-CGa -5'
9894 3' -52.4 NC_002641.1 + 156799 0.68 0.95531
Target:  5'- aGUGACGGCGCg--GCGAGAAaaaGcGCUa -3'
miRNA:   3'- cCGUUGCCGCGacaUGCUUUUg--C-CGA- -5'
9894 3' -52.4 NC_002641.1 + 116801 0.69 0.927311
Target:  5'- aGGCGaugucguacggGCGGUGCgggGUugGAuccuCGGCa -3'
miRNA:   3'- -CCGU-----------UGCCGCGa--CAugCUuuu-GCCGa -5'
9894 3' -52.4 NC_002641.1 + 109374 0.67 0.974895
Target:  5'- --aAACGGCGCgccacugGAGAACGGCa -3'
miRNA:   3'- ccgUUGCCGCGacaug--CUUUUGCCGa -5'
9894 3' -52.4 NC_002641.1 + 83301 0.68 0.946953
Target:  5'- uGGCAGCGGUuuCUGUGaauaGGAggGAUGGCg -3'
miRNA:   3'- -CCGUUGCCGc-GACAUg---CUU--UUGCCGa -5'
9894 3' -52.4 NC_002641.1 + 23056 0.68 0.95531
Target:  5'- -aCAGCuuCGCUGUA-GAGAGCGGCUg -3'
miRNA:   3'- ccGUUGccGCGACAUgCUUUUGCCGA- -5'
9894 3' -52.4 NC_002641.1 + 1258 0.66 0.979754
Target:  5'- gGGCAACGuG-GCUGUugccCGAcAGACGGUc -3'
miRNA:   3'- -CCGUUGC-CgCGACAu---GCU-UUUGCCGa -5'
9894 3' -52.4 NC_002641.1 + 51093 0.66 0.985682
Target:  5'- ----gUGGCGCauuauuucUGaGCGGAGACGGCUa -3'
miRNA:   3'- ccguuGCCGCG--------ACaUGCUUUUGCCGA- -5'
9894 3' -52.4 NC_002641.1 + 140593 0.68 0.951251
Target:  5'- uGGCAAaccgacacaGGUcuGCUGUACGGAcuaauAugGGCa -3'
miRNA:   3'- -CCGUUg--------CCG--CGACAUGCUU-----UugCCGa -5'
9894 3' -52.4 NC_002641.1 + 157113 0.68 0.954117
Target:  5'- aGGCAGCguugucGGCGCUgcaaagugugGUGucugaauugaacucCGGAAGCGGCUu -3'
miRNA:   3'- -CCGUUG------CCGCGA----------CAU--------------GCUUUUGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.