Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9894 | 3' | -52.4 | NC_002641.1 | + | 83301 | 0.68 | 0.946953 |
Target: 5'- uGGCAGCGGUuuCUGUGaauaGGAggGAUGGCg -3' miRNA: 3'- -CCGUUGCCGc-GACAUg---CUU--UUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 6266 | 0.69 | 0.927311 |
Target: 5'- aGGCGaugucguacggGCGGUGCgggGUugGAuccuCGGCa -3' miRNA: 3'- -CCGU-----------UGCCGCGa--CAugCUuuu-GCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 116801 | 0.69 | 0.927311 |
Target: 5'- aGGCGaugucguacggGCGGUGCgggGUugGAuccuCGGCa -3' miRNA: 3'- -CCGU-----------UGCCGCGa--CAugCUuuu-GCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 149768 | 0.69 | 0.921781 |
Target: 5'- cGGCAGCGGCaGCg--ACGAAGAUGa-- -3' miRNA: 3'- -CCGUUGCCG-CGacaUGCUUUUGCcga -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 132704 | 0.69 | 0.921781 |
Target: 5'- cGGCAGCGGCaGCg--ACGAAGAUGa-- -3' miRNA: 3'- -CCGUUGCCG-CGacaUGCUUUUGCcga -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 128140 | 0.69 | 0.916003 |
Target: 5'- aGGCGuuuGCuGCGgUGgaUGCGGAGACGGCc -3' miRNA: 3'- -CCGU---UGcCGCgAC--AUGCUUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 154332 | 0.69 | 0.916003 |
Target: 5'- aGGCGuuuGCuGCGgUGgaUGCGGAGACGGCc -3' miRNA: 3'- -CCGU---UGcCGCgAC--AUGCUUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 49707 | 0.7 | 0.909977 |
Target: 5'- uGCAGCGGCaGCauUGUugGGGAG-GGCa -3' miRNA: 3'- cCGUUGCCG-CG--ACAugCUUUUgCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 153559 | 0.7 | 0.897192 |
Target: 5'- cGGCAcgcGCGGUgucGCUaGUaGCGGAAGCGGUc -3' miRNA: 3'- -CCGU---UGCCG---CGA-CA-UGCUUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 128914 | 0.7 | 0.897192 |
Target: 5'- cGGCAcgcGCGGUgucGCUaGUaGCGGAAGCGGUc -3' miRNA: 3'- -CCGU---UGCCG---CGA-CA-UGCUUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 125433 | 0.7 | 0.890438 |
Target: 5'- aGCGGCGGCcgaGCUGgagcgGCGAGAGaGGCc -3' miRNA: 3'- cCGUUGCCG---CGACa----UGCUUUUgCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 157039 | 0.7 | 0.890438 |
Target: 5'- aGCGGCGGCcgaGCUGgagcgGCGAGAGaGGCc -3' miRNA: 3'- cCGUUGCCG---CGACa----UGCUUUUgCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 89205 | 0.71 | 0.853224 |
Target: 5'- cGuCAA-GGCGCUGUAUGggGcaaaagcaauaGCGGCUa -3' miRNA: 3'- cC-GUUgCCGCGACAUGCuuU-----------UGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 30129 | 0.71 | 0.853224 |
Target: 5'- cGCAGCGGCaauGCggagACGAcgGCGGCa -3' miRNA: 3'- cCGUUGCCG---CGaca-UGCUuuUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 136755 | 0.73 | 0.754508 |
Target: 5'- uGGCGuCGGCGC-GUACc--GACGGCUg -3' miRNA: 3'- -CCGUuGCCGCGaCAUGcuuUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 145717 | 0.73 | 0.754508 |
Target: 5'- uGGCGuCGGCGC-GUACc--GACGGCUg -3' miRNA: 3'- -CCGUuGCCGCGaCAUGcuuUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 125257 | 1.11 | 0.00524 |
Target: 5'- uGGCAACGGCGCUGUACGAAAACGGCUg -3' miRNA: 3'- -CCGUUGCCGCGACAUGCUUUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 157215 | 1.11 | 0.00524 |
Target: 5'- uGGCAACGGCGCUGUACGAAAACGGCUg -3' miRNA: 3'- -CCGUUGCCGCGACAUGCUUUUGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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