Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9894 | 5' | -61 | NC_002641.1 | + | 21132 | 0.66 | 0.688397 |
Target: 5'- --cGCCGUuUUGGCuCGCcugaggcgcgaaAGCGaCUGGCUc -3' miRNA: 3'- guuCGGCG-AACCG-GCG------------UCGC-GACCGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 128569 | 0.66 | 0.668592 |
Target: 5'- -uAGCCaCUcGGCCacGCGGCGgaGGCg -3' miRNA: 3'- guUCGGcGAaCCGG--CGUCGCgaCCGg -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 153904 | 0.66 | 0.668592 |
Target: 5'- -uAGCCaCUcGGCCacGCGGCGgaGGCg -3' miRNA: 3'- guUCGGcGAaCCGG--CGUCGCgaCCGg -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 5679 | 0.67 | 0.638692 |
Target: 5'- uCGGGCgCGCcgggaugagcGGCCGauCAGCGCgcggcgGGCCg -3' miRNA: 3'- -GUUCG-GCGaa--------CCGGC--GUCGCGa-----CCGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 118043 | 0.67 | 0.638692 |
Target: 5'- uCGGGCgCGCcgggaugagcGGCCGauCAGCGCgcggcgGGCCg -3' miRNA: 3'- -GUUCG-GCGaa--------CCGGC--GUCGCGa-----CCGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 118254 | 0.68 | 0.559256 |
Target: 5'- uCGAGCCGgUcgcccGCCGC-GCGCUgaucGGCCg -3' miRNA: 3'- -GUUCGGCgAac---CGGCGuCGCGA----CCGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 26025 | 0.68 | 0.530089 |
Target: 5'- aCAAGCCGC----CCGCaAGCuGCUGGCa -3' miRNA: 3'- -GUUCGGCGaaccGGCG-UCG-CGACCGg -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 157203 | 0.69 | 0.473601 |
Target: 5'- --cGCCGCUc-GCCGCAGCuCUGccGCCg -3' miRNA: 3'- guuCGGCGAacCGGCGUCGcGAC--CGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 125269 | 0.69 | 0.473601 |
Target: 5'- --cGCCGCUc-GCCGCAGCuCUGccGCCg -3' miRNA: 3'- guuCGGCGAacCGGCGUCGcGAC--CGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 5468 | 0.7 | 0.411771 |
Target: 5'- uCGAGCCGgUcGGcCCGCcGCGCgcugaucGGCCg -3' miRNA: 3'- -GUUCGGCgAaCC-GGCGuCGCGa------CCGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 84983 | 0.73 | 0.290847 |
Target: 5'- ---uUCGUUUGGCCGCAGCcGCUG-CCa -3' miRNA: 3'- guucGGCGAACCGGCGUCG-CGACcGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 157253 | 1.11 | 0.000632 |
Target: 5'- cCAAGCCGCUUGGCCGCAGCGCUGGCCg -3' miRNA: 3'- -GUUCGGCGAACCGGCGUCGCGACCGG- -5' |
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9894 | 5' | -61 | NC_002641.1 | + | 125220 | 1.11 | 0.000632 |
Target: 5'- cCAAGCCGCUUGGCCGCAGCGCUGGCCg -3' miRNA: 3'- -GUUCGGCGAACCGGCGUCGCGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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