miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9895 5' -64.3 NC_002641.1 + 95182 0.66 0.582158
Target:  5'- gUCCCUuaaCCGGAagacuUCCCCAuaugcugcauuUGGCACaCCg -3'
miRNA:   3'- -AGGGG---GGCCU-----AGGGGU-----------ACCGUGgGGg -5'
9895 5' -64.3 NC_002641.1 + 246 0.66 0.582158
Target:  5'- cUCCCCCCaaacaaaCCgAUGGC-CCCCUu -3'
miRNA:   3'- -AGGGGGGccuag--GGgUACCGuGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 123476 0.66 0.582158
Target:  5'- cUCCCCCCaaacaaaCCgAUGGC-CCCCUu -3'
miRNA:   3'- -AGGGGGGccuag--GGgUACCGuGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 110870 0.66 0.563209
Target:  5'- uUUCgCCCGacaaUCCAcGGCGCCCCCa -3'
miRNA:   3'- -AGGgGGGCcuagGGGUaCCGUGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 133053 0.66 0.54443
Target:  5'- -aCCCCaGGA-CCCC-UGGCgAUCCCUa -3'
miRNA:   3'- agGGGGgCCUaGGGGuACCG-UGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 149420 0.66 0.54443
Target:  5'- -aCCCCaGGA-CCCC-UGGCgAUCCCUa -3'
miRNA:   3'- agGGGGgCCUaGGGGuACCG-UGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 128402 0.68 0.45432
Target:  5'- gCCUCCauCGGGgacUCCCCAUcaUACCCCCa -3'
miRNA:   3'- aGGGGG--GCCU---AGGGGUAccGUGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 154070 0.68 0.45432
Target:  5'- gCCUCCauCGGGgacUCCCCAUcaUACCCCCa -3'
miRNA:   3'- aGGGGG--GCCU---AGGGGUAccGUGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 129374 0.7 0.343244
Target:  5'- aUCCUCCgaCGGAUCUCCAUcGGCugggGCCUCUa -3'
miRNA:   3'- -AGGGGG--GCCUAGGGGUA-CCG----UGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 153098 0.7 0.343244
Target:  5'- aUCCUCCgaCGGAUCUCCAUcGGCugggGCCUCUa -3'
miRNA:   3'- -AGGGGG--GCCUAGGGGUA-CCG----UGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 149595 0.72 0.252542
Target:  5'- -aCCCCCGGAcggacggucagagUCCCC--GGCAUCCUCc -3'
miRNA:   3'- agGGGGGCCU-------------AGGGGuaCCGUGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 132878 0.72 0.252542
Target:  5'- -aCCCCCGGAcggacggucagagUCCCC--GGCAUCCUCc -3'
miRNA:   3'- agGGGGGCCU-------------AGGGGuaCCGUGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 126892 1.11 0.000441
Target:  5'- cUCCCCCCGGAUCCCCAUGGCACCCCCg -3'
miRNA:   3'- -AGGGGGGCCUAGGGGUACCGUGGGGG- -5'
9895 5' -64.3 NC_002641.1 + 155581 1.11 0.000441
Target:  5'- cUCCCCCCGGAUCCCCAUGGCACCCCCg -3'
miRNA:   3'- -AGGGGGGCCUAGGGGUACCGUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.