miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9898 5' -51.7 NC_002641.1 + 10575 0.66 0.98868
Target:  5'- -aGACCugGGACAG-CUCcgcuggaAGCGa -3'
miRNA:   3'- uaUUGGugCCUGUCaGAGcuug---UCGC- -5'
9898 5' -51.7 NC_002641.1 + 1488 0.66 0.987781
Target:  5'- -aAAUCGCGGGCGGUCUacacucuugcauuucCaGACAGCc -3'
miRNA:   3'- uaUUGGUGCCUGUCAGA---------------GcUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 122235 0.66 0.987781
Target:  5'- -aAAUCGCGGGCGGUCUacacucuugcauuucCaGACAGCc -3'
miRNA:   3'- uaUUGGUGCCUGUCAGA---------------GcUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 6331 0.66 0.987152
Target:  5'- uAUGACgACGGACAGUaccgucccgaCGAAC-GCGa -3'
miRNA:   3'- -UAUUGgUGCCUGUCAga--------GCUUGuCGC- -5'
9898 5' -51.7 NC_002641.1 + 121731 0.66 0.987152
Target:  5'- aGUGGCCAggcuUGGGCGuauuuUCUCGGugAGCGu -3'
miRNA:   3'- -UAUUGGU----GCCUGUc----AGAGCUugUCGC- -5'
9898 5' -51.7 NC_002641.1 + 109103 0.67 0.981608
Target:  5'- gAUGGCUAUGGAa--UC-CGAACGGCGa -3'
miRNA:   3'- -UAUUGGUGCCUgucAGaGCUUGUCGC- -5'
9898 5' -51.7 NC_002641.1 + 2459 0.67 0.979409
Target:  5'- ----aCACGGcCAGUCgUUGAACAGUa -3'
miRNA:   3'- uauugGUGCCuGUCAG-AGCUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 121263 0.67 0.979409
Target:  5'- ----aCACGGcCAGUCgUUGAACAGUa -3'
miRNA:   3'- uauugGUGCCuGUCAG-AGCUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 99051 0.67 0.977022
Target:  5'- -aGACgAUGGACGccGUCUCGAucgcGCAcGCGa -3'
miRNA:   3'- uaUUGgUGCCUGU--CAGAGCU----UGU-CGC- -5'
9898 5' -51.7 NC_002641.1 + 101540 0.67 0.974437
Target:  5'- -gAACCGCcgaGGACAGa--CGAACAGCu -3'
miRNA:   3'- uaUUGGUG---CCUGUCagaGCUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 2305 0.68 0.965422
Target:  5'- -aGGCUugGGcACGGUCcuucucgCGGAUAGCGu -3'
miRNA:   3'- uaUUGGugCC-UGUCAGa------GCUUGUCGC- -5'
9898 5' -51.7 NC_002641.1 + 121418 0.68 0.965422
Target:  5'- -aGGCUugGGcACGGUCcuucucgCGGAUAGCGu -3'
miRNA:   3'- uaUUGGugCC-UGUCAGa------GCUUGUCGC- -5'
9898 5' -51.7 NC_002641.1 + 120173 0.69 0.95022
Target:  5'- -aAGCCG-GGGCGGUCUcaggcCGGACAGUa -3'
miRNA:   3'- uaUUGGUgCCUGUCAGA-----GCUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 3550 0.69 0.95022
Target:  5'- -aAGCCG-GGGCGGUCUcaggcCGGACAGUa -3'
miRNA:   3'- uaUUGGUgCCUGUCAGA-----GCUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 102238 0.69 0.931106
Target:  5'- --cACCGCGGACAuGUUUCGGGaggAGUGg -3'
miRNA:   3'- uauUGGUGCCUGU-CAGAGCUUg--UCGC- -5'
9898 5' -51.7 NC_002641.1 + 131165 0.72 0.841676
Target:  5'- --cACCGCaGGCAGUCUa-AGCAGCGg -3'
miRNA:   3'- uauUGGUGcCUGUCAGAgcUUGUCGC- -5'
9898 5' -51.7 NC_002641.1 + 151307 0.72 0.841676
Target:  5'- --cACCGCaGGCAGUCUa-AGCAGCGg -3'
miRNA:   3'- uauUGGUGcCUGUCAGAgcUUGUCGC- -5'
9898 5' -51.7 NC_002641.1 + 64136 0.76 0.656725
Target:  5'- uAUAAUCACGGACAGUC---AACAGCa -3'
miRNA:   3'- -UAUUGGUGCCUGUCAGagcUUGUCGc -5'
9898 5' -51.7 NC_002641.1 + 128615 1.07 0.010541
Target:  5'- gAUAACCACGGACAGUCUCGAACAGCGc -3'
miRNA:   3'- -UAUUGGUGCCUGUCAGAGCUUGUCGC- -5'
9898 5' -51.7 NC_002641.1 + 153857 1.07 0.010541
Target:  5'- gAUAACCACGGACAGUCUCGAACAGCGc -3'
miRNA:   3'- -UAUUGGUGCCUGUCAGAGCUUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.