Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9899 | 5' | -65.4 | NC_002641.1 | + | 146973 | 0.66 | 0.530873 |
Target: 5'- gCCUCGguuGCCggGGAGCGGUcuUGCCGa -3' miRNA: 3'- -GGGGCaucCGGggCCUCGCCG--ACGGC- -5' |
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9899 | 5' | -65.4 | NC_002641.1 | + | 135500 | 0.66 | 0.530873 |
Target: 5'- gCCUCGguuGCCggGGAGCGGUcuUGCCGa -3' miRNA: 3'- -GGGGCaucCGGggCCUCGCCG--ACGGC- -5' |
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9899 | 5' | -65.4 | NC_002641.1 | + | 125288 | 0.7 | 0.299997 |
Target: 5'- gCCgCCGUAGGaCUCGGcGGCGGCccuuccuUGCCGc -3' miRNA: 3'- -GG-GGCAUCCgGGGCC-UCGCCG-------ACGGC- -5' |
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9899 | 5' | -65.4 | NC_002641.1 | + | 147061 | 0.72 | 0.220414 |
Target: 5'- uUCCCGUucuucuuucagGGGaCCaCCGGGGauuGGCUGCCGu -3' miRNA: 3'- -GGGGCA-----------UCC-GG-GGCCUCg--CCGACGGC- -5' |
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9899 | 5' | -65.4 | NC_002641.1 | + | 135412 | 0.72 | 0.220414 |
Target: 5'- uUCCCGUucuucuuucagGGGaCCaCCGGGGauuGGCUGCCGu -3' miRNA: 3'- -GGGGCA-----------UCC-GG-GGCCUCg--CCGACGGC- -5' |
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9899 | 5' | -65.4 | NC_002641.1 | + | 129228 | 0.99 | 0.002988 |
Target: 5'- uCCCCGUA-GCCCCGGAGCGGCUGCCGg -3' miRNA: 3'- -GGGGCAUcCGGGGCCUCGCCGACGGC- -5' |
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9899 | 5' | -65.4 | NC_002641.1 | + | 153244 | 1.09 | 0.000477 |
Target: 5'- uCCCCGUAGGCCCCGGAGCGGCUGCCGg -3' miRNA: 3'- -GGGGCAUCCGGGGCCUCGCCGACGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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