miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9901 3' -52.4 NC_002641.1 + 129882 0.66 0.985941
Target:  5'- --cCCCCCG-CGGUUccuguUGGUUCGGu -3'
miRNA:   3'- guaGGGGGCuGUCGAau---ACCAAGUCc -5'
9901 3' -52.4 NC_002641.1 + 152591 0.66 0.985941
Target:  5'- --cCCCCCG-CGGUUccuguUGGUUCGGu -3'
miRNA:   3'- guaGGGGGCuGUCGAau---ACCAAGUCc -5'
9901 3' -52.4 NC_002641.1 + 5632 0.67 0.9753
Target:  5'- --aCCCCCGAguGCga---GUUUAGGg -3'
miRNA:   3'- guaGGGGGCUguCGaauacCAAGUCC- -5'
9901 3' -52.4 NC_002641.1 + 118091 0.67 0.9753
Target:  5'- --aCCCCCGAguGCga---GUUUAGGg -3'
miRNA:   3'- guaGGGGGCUguCGaauacCAAGUCC- -5'
9901 3' -52.4 NC_002641.1 + 101740 0.67 0.9666
Target:  5'- cUAUCCCCCuagGACaacgAGCUcgcccgggGGUUCGGGc -3'
miRNA:   3'- -GUAGGGGG---CUG----UCGAaua-----CCAAGUCC- -5'
9901 3' -52.4 NC_002641.1 + 5312 0.67 0.963272
Target:  5'- gAUCgCCCG-CAGCUcgGUGGUUgccgcgCGGGa -3'
miRNA:   3'- gUAGgGGGCuGUCGAa-UACCAA------GUCC- -5'
9901 3' -52.4 NC_002641.1 + 118411 0.67 0.963272
Target:  5'- gAUCgCCCG-CAGCUcgGUGGUUgccgcgCGGGa -3'
miRNA:   3'- gUAGgGGGCuGUCGAa-UACCAA------GUCC- -5'
9901 3' -52.4 NC_002641.1 + 15175 0.68 0.959718
Target:  5'- --cCCCCCaAUGGCUUucgaAUGGggCGGGg -3'
miRNA:   3'- guaGGGGGcUGUCGAA----UACCaaGUCC- -5'
9901 3' -52.4 NC_002641.1 + 127680 0.71 0.854592
Target:  5'- --aCCCCCGauGCGGCUUAUGGgu--GGc -3'
miRNA:   3'- guaGGGGGC--UGUCGAAUACCaaguCC- -5'
9901 3' -52.4 NC_002641.1 + 154792 0.71 0.854592
Target:  5'- --aCCCCCGauGCGGCUUAUGGgu--GGc -3'
miRNA:   3'- guaGGGGGC--UGUCGAAUACCaaguCC- -5'
9901 3' -52.4 NC_002641.1 + 70126 0.76 0.592176
Target:  5'- --gCCCCCGAUAGCUacUAaGGUUgGGGg -3'
miRNA:   3'- guaGGGGGCUGUCGA--AUaCCAAgUCC- -5'
9901 3' -52.4 NC_002641.1 + 132421 1 0.0256
Target:  5'- gCAUCCCCCGACAGCUauUGGUUCAGGu -3'
miRNA:   3'- -GUAGGGGGCUGUCGAauACCAAGUCC- -5'
9901 3' -52.4 NC_002641.1 + 150051 1 0.0256
Target:  5'- gCAUCCCCCGACAGCUauUGGUUCAGGu -3'
miRNA:   3'- -GUAGGGGGCUGUCGAauACCAAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.