miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9903 3' -57.8 NC_002641.1 + 117428 0.66 0.817661
Target:  5'- gUCugAUgGCgGCUUUCUGCGCggGCgCUa -3'
miRNA:   3'- -AGugUA-CGgCGGAAGGCGCGaaCG-GA- -5'
9903 3' -57.8 NC_002641.1 + 67100 0.66 0.800143
Target:  5'- uUCGCGUGCCGCCU-CCGaUGacgaUGCa- -3'
miRNA:   3'- -AGUGUACGGCGGAaGGC-GCga--ACGga -5'
9903 3' -57.8 NC_002641.1 + 125261 0.67 0.763368
Target:  5'- -aGCucgGCCGCCgcucgCCGCaGCUcUGCCg -3'
miRNA:   3'- agUGua-CGGCGGaa---GGCG-CGA-ACGGa -5'
9903 3' -57.8 NC_002641.1 + 125068 0.67 0.763368
Target:  5'- cUCACA-GCCGUUUUCguacaGCGCcgUUGCCa -3'
miRNA:   3'- -AGUGUaCGGCGGAAGg----CGCG--AACGGa -5'
9903 3' -57.8 NC_002641.1 + 157211 0.67 0.763368
Target:  5'- -aGCucgGCCGCCgcucgCCGCaGCUcUGCCg -3'
miRNA:   3'- agUGua-CGGCGGaa---GGCG-CGA-ACGGa -5'
9903 3' -57.8 NC_002641.1 + 157404 0.67 0.763368
Target:  5'- cUCACA-GCCGUUUUCguacaGCGCcgUUGCCa -3'
miRNA:   3'- -AGUGUaCGGCGGAAGg----CGCG--AACGGa -5'
9903 3' -57.8 NC_002641.1 + 29934 0.67 0.753862
Target:  5'- cCAaaaGUGCCGCCgucgUCUcCGCaUUGCCg -3'
miRNA:   3'- aGUg--UACGGCGGa---AGGcGCG-AACGGa -5'
9903 3' -57.8 NC_002641.1 + 118251 0.68 0.704924
Target:  5'- -aGCcgGUCGCCcgCCGCGCgcugaucgGCCg -3'
miRNA:   3'- agUGuaCGGCGGaaGGCGCGaa------CGGa -5'
9903 3' -57.8 NC_002641.1 + 20315 0.7 0.583265
Target:  5'- aUCACAUGaaGCCUguauugUCCGCGCUUuCUa -3'
miRNA:   3'- -AGUGUACggCGGA------AGGCGCGAAcGGa -5'
9903 3' -57.8 NC_002641.1 + 52496 0.76 0.294532
Target:  5'- cUCGCGUGCCGCCcaagccagcuaUCGCGCUUGCg- -3'
miRNA:   3'- -AGUGUACGGCGGaa---------GGCGCGAACGga -5'
9903 3' -57.8 NC_002641.1 + 133698 1.08 0.002026
Target:  5'- cUCACAUGCCGCCUUCCGCGCUUGCCUa -3'
miRNA:   3'- -AGUGUACGGCGGAAGGCGCGAACGGA- -5'
9903 3' -57.8 NC_002641.1 + 148774 1.08 0.002026
Target:  5'- cUCACAUGCCGCCUUCCGCGCUUGCCUa -3'
miRNA:   3'- -AGUGUACGGCGGAAGGCGCGAACGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.