Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 155552 | 0.66 | 0.918772 |
|
Target: 5'- gGGCUGGGCGGAU-GCuUgCCUAGUGg -3' miRNA: 3'- gUCGACUCGCUUGgUGuAgGGGUCAC- -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 126920 | 0.66 | 0.918772 |
|
Target: 5'- gGGCUGGGCGGAU-GCuUgCCUAGUGg -3' miRNA: 3'- gUCGACUCGCUUGgUGuAgGGGUCAC- -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 127302 | 0.67 | 0.880143 |
|
Target: 5'- -uGCUGcagauacucuAGCGcACCAaccCAUCCCCAGUc -3' miRNA: 3'- guCGAC----------UCGCuUGGU---GUAGGGGUCAc -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 40878 | 0.67 | 0.86543 |
|
Target: 5'- -cGC-GAG-GGACCACAUCCCgCAGa- -3' miRNA: 3'- guCGaCUCgCUUGGUGUAGGG-GUCac -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 1567 | 0.68 | 0.825022 |
|
Target: 5'- gGGCUGAGgGAAUCGuccuuucgUGUgCCCAGUGu -3' miRNA: 3'- gUCGACUCgCUUGGU--------GUAgGGGUCAC- -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 122155 | 0.68 | 0.825022 |
|
Target: 5'- gGGCUGAGgGAAUCGuccuuucgUGUgCCCAGUGu -3' miRNA: 3'- gUCGACUCgCUUGGU--------GUAgGGGUCAC- -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 65873 | 0.69 | 0.785753 |
|
Target: 5'- gAGCUGuugacacugguccGCGAAUCACGUCCCUGGc- -3' miRNA: 3'- gUCGACu------------CGCUUGGUGUAGGGGUCac -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 56109 | 0.71 | 0.681527 |
|
Target: 5'- uCAGaaagUGAGCGAugCGCGUCUCUAGg- -3' miRNA: 3'- -GUCg---ACUCGCUugGUGUAGGGGUCac -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 134797 | 1.08 | 0.003427 |
|
Target: 5'- aCAGCUGAGCGAACCACAUCCCCAGUGu -3' miRNA: 3'- -GUCGACUCGCUUGGUGUAGGGGUCAC- -5' |
|||||||
| 9904 | 3' | -55.6 | NC_002641.1 | + | 147676 | 1.08 | 0.003427 |
|
Target: 5'- aCAGCUGAGCGAACCACAUCCCCAGUGu -3' miRNA: 3'- -GUCGACUCGCUUGGUGUAGGGGUCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home