miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9904 5' -53.7 NC_002641.1 + 47457 0.66 0.967913
Target:  5'- uACCACCaaaucGGUAGAcuggcaucuccaauaUUUCAUUGGUUCGu -3'
miRNA:   3'- -UGGUGG-----CCGUCUa--------------AGAGUAACCGAGC- -5'
9904 5' -53.7 NC_002641.1 + 104824 0.66 0.9676
Target:  5'- aGCUGCCGGUGGA-UCUg---GGCUCa -3'
miRNA:   3'- -UGGUGGCCGUCUaAGAguaaCCGAGc -5'
9904 5' -53.7 NC_002641.1 + 55100 0.66 0.9676
Target:  5'- cACCACCGGUGGggUCUaccauaGUUCGg -3'
miRNA:   3'- -UGGUGGCCGUCuaAGAguaac-CGAGC- -5'
9904 5' -53.7 NC_002641.1 + 51576 0.66 0.967284
Target:  5'- gGCUACUcauuauaGGCAGGUUCUCAgaaGGUauuUCGc -3'
miRNA:   3'- -UGGUGG-------CCGUCUAAGAGUaa-CCG---AGC- -5'
9904 5' -53.7 NC_002641.1 + 129210 0.67 0.949053
Target:  5'- gGCUGCCGGCGGcugCUCGggaauaccuUUGGC-CGa -3'
miRNA:   3'- -UGGUGGCCGUCuaaGAGU---------AACCGaGC- -5'
9904 5' -53.7 NC_002641.1 + 153263 0.67 0.949053
Target:  5'- gGCUGCCGGCGGcugCUCGggaauaccuUUGGC-CGa -3'
miRNA:   3'- -UGGUGGCCGUCuaaGAGU---------AACCGaGC- -5'
9904 5' -53.7 NC_002641.1 + 31929 0.67 0.939983
Target:  5'- uAUCGCCGGCGGAccUUC-CAUUaGuGCUCc -3'
miRNA:   3'- -UGGUGGCCGUCU--AAGaGUAA-C-CGAGc -5'
9904 5' -53.7 NC_002641.1 + 129038 0.69 0.865063
Target:  5'- aGCCGCCGGCAGccgCUCcggGGCcuaCGg -3'
miRNA:   3'- -UGGUGGCCGUCuaaGAGuaaCCGa--GC- -5'
9904 5' -53.7 NC_002641.1 + 153434 0.69 0.865063
Target:  5'- aGCCGCCGGCAGccgCUCcggGGCcuaCGg -3'
miRNA:   3'- -UGGUGGCCGUCuaaGAGuaaCCGa--GC- -5'
9904 5' -53.7 NC_002641.1 + 134763 1 0.017573
Target:  5'- aACCACCGGCAGAUUCUCAUUGGCUg- -3'
miRNA:   3'- -UGGUGGCCGUCUAAGAGUAACCGAgc -5'
9904 5' -53.7 NC_002641.1 + 147709 1 0.017573
Target:  5'- aACCACCGGCAGAUUCUCAUUGGCUg- -3'
miRNA:   3'- -UGGUGGCCGUCUAAGAGUAACCGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.