miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9906 5' -59.1 NC_002641.1 + 146783 1.12 0.001104
Target:  5'- gCUCGGCAAGACCGCUCCCCGGCAACCg -3'
miRNA:   3'- -GAGCCGUUCUGGCGAGGGGCCGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 135689 1.12 0.001104
Target:  5'- gCUCGGCAAGACCGCUCCCCGGCAACCg -3'
miRNA:   3'- -GAGCCGUUCUGGCGAGGGGCCGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 118368 0.79 0.174956
Target:  5'- gUCGGCAAGACCGCcgagccUCCgUCGGgAACCg -3'
miRNA:   3'- gAGCCGUUCUGGCG------AGG-GGCCgUUGG- -5'
9906 5' -59.1 NC_002641.1 + 5354 0.79 0.174956
Target:  5'- gUCGGCAAGACCGCcgagccUCCgUCGGgAACCg -3'
miRNA:   3'- gAGCCGUUCUGGCG------AGG-GGCCgUUGG- -5'
9906 5' -59.1 NC_002641.1 + 154477 0.79 0.17929
Target:  5'- uCUgGGCGgaGGAUCGCggggcaauuucUCCCCGGCGACCc -3'
miRNA:   3'- -GAgCCGU--UCUGGCG-----------AGGGGCCGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 127995 0.79 0.17929
Target:  5'- uCUgGGCGgaGGAUCGCggggcaauuucUCCCCGGCGACCc -3'
miRNA:   3'- -GAgCCGU--UCUGGCG-----------AGGGGCCGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 83002 0.79 0.17929
Target:  5'- aCUCGGCAuguauaaaauGGACCGaaCCCCGGCAuucaaagacucuACCg -3'
miRNA:   3'- -GAGCCGU----------UCUGGCgaGGGGCCGU------------UGG- -5'
9906 5' -59.1 NC_002641.1 + 157173 0.71 0.524056
Target:  5'- aCUCGGCGGGGCCcUUCCuuGccGCAGCa -3'
miRNA:   3'- -GAGCCGUUCUGGcGAGGggC--CGUUGg -5'
9906 5' -59.1 NC_002641.1 + 145680 0.7 0.562721
Target:  5'- --aGGCGucGACCGUgUCCCCGGCAu-- -3'
miRNA:   3'- gagCCGUu-CUGGCG-AGGGGCCGUugg -5'
9906 5' -59.1 NC_002641.1 + 136792 0.7 0.562721
Target:  5'- --aGGCGucGACCGUgUCCCCGGCAu-- -3'
miRNA:   3'- gagCCGUu-CUGGCG-AGGGGCCGUugg -5'
9906 5' -59.1 NC_002641.1 + 33511 0.69 0.621957
Target:  5'- --aGGCAAGcaGuuGCUCCuuGGCGcaGCCc -3'
miRNA:   3'- gagCCGUUC--UggCGAGGggCCGU--UGG- -5'
9906 5' -59.1 NC_002641.1 + 5476 0.69 0.631894
Target:  5'- gUCGGCccgccgcgcgcuGAucGGCCGCUCauCCCGGCGcGCCc -3'
miRNA:   3'- gAGCCG------------UU--CUGGCGAG--GGGCCGU-UGG- -5'
9906 5' -59.1 NC_002641.1 + 157210 0.69 0.641832
Target:  5'- gCUCGGCc--GCCGCUCgCC-GCAGCUc -3'
miRNA:   3'- -GAGCCGuucUGGCGAGgGGcCGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 125262 0.69 0.641832
Target:  5'- gCUCGGCc--GCCGCUCgCC-GCAGCUc -3'
miRNA:   3'- -GAGCCGuucUGGCGAGgGGcCGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 131262 0.69 0.661678
Target:  5'- aUCuGCAcgGGACauacccUGCUUCCCGGCAugCg -3'
miRNA:   3'- gAGcCGU--UCUG------GCGAGGGGCCGUugG- -5'
9906 5' -59.1 NC_002641.1 + 120599 0.69 0.661678
Target:  5'- uCUCGGCAAGGCUuucuugcguaugGUUCugCUCGuGCGACCu -3'
miRNA:   3'- -GAGCCGUUCUGG------------CGAG--GGGC-CGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 151210 0.69 0.661678
Target:  5'- aUCuGCAcgGGACauacccUGCUUCCCGGCAugCg -3'
miRNA:   3'- gAGcCGU--UCUG------GCGAGGGGCCGUugG- -5'
9906 5' -59.1 NC_002641.1 + 3124 0.69 0.661678
Target:  5'- uCUCGGCAAGGCUuucuugcguaugGUUCugCUCGuGCGACCu -3'
miRNA:   3'- -GAGCCGUUCUGG------------CGAG--GGGC-CGUUGG- -5'
9906 5' -59.1 NC_002641.1 + 62287 0.68 0.690278
Target:  5'- uCUCGGCGAGAUCGCggggacauuugcaUCCaCauGCAGCg -3'
miRNA:   3'- -GAGCCGUUCUGGCG-------------AGG-GgcCGUUGg -5'
9906 5' -59.1 NC_002641.1 + 153457 0.68 0.691259
Target:  5'- aUCGGCcaAAGGuauucCCGagcagCCgCCGGCAGCCg -3'
miRNA:   3'- gAGCCG--UUCU-----GGCga---GG-GGCCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.