miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9907 3' -61.8 NC_002641.1 + 52159 0.66 0.716292
Target:  5'- aCG-GGACGUCCACcucaGGCAaaGCUGUa -3'
miRNA:   3'- gGCgCCUGCAGGUGcg--CCGU--CGGCAg -5'
9907 3' -61.8 NC_002641.1 + 124791 0.66 0.70684
Target:  5'- aCGCGGAaGggagCgAUGcCGGCAGCUGUg -3'
miRNA:   3'- gGCGCCUgCa---GgUGC-GCCGUCGGCAg -5'
9907 3' -61.8 NC_002641.1 + 110075 0.66 0.69733
Target:  5'- -aGCGGAgGUuaucuaggaCCGCGC--CAGCCGUCu -3'
miRNA:   3'- ggCGCCUgCA---------GGUGCGccGUCGGCAG- -5'
9907 3' -61.8 NC_002641.1 + 90326 0.66 0.69733
Target:  5'- uUCGCGGGagaGccUCCAUGUaGGCauuuaauccaAGCCGUCa -3'
miRNA:   3'- -GGCGCCUg--C--AGGUGCG-CCG----------UCGGCAG- -5'
9907 3' -61.8 NC_002641.1 + 5566 0.66 0.678171
Target:  5'- gCCGCGGACcgGUCaAUGUGGCGGuucCCGa- -3'
miRNA:   3'- -GGCGCCUG--CAGgUGCGCCGUC---GGCag -5'
9907 3' -61.8 NC_002641.1 + 118156 0.66 0.678171
Target:  5'- gCCGCGGACcgGUCaAUGUGGCGGuucCCGa- -3'
miRNA:   3'- -GGCGCCUG--CAGgUGCGCCGUC---GGCag -5'
9907 3' -61.8 NC_002641.1 + 145744 0.67 0.629808
Target:  5'- gCGUGGACGUCC--GCGGguGUacauuccaaaCGUCc -3'
miRNA:   3'- gGCGCCUGCAGGugCGCCguCG----------GCAG- -5'
9907 3' -61.8 NC_002641.1 + 136728 0.67 0.629808
Target:  5'- gCGUGGACGUCC--GCGGguGUacauuccaaaCGUCc -3'
miRNA:   3'- gGCGCCUGCAGGugCGCCguCG----------GCAG- -5'
9907 3' -61.8 NC_002641.1 + 102432 0.68 0.600753
Target:  5'- -aGUGuGCGUCCACGUGGUucuAGCaGUCg -3'
miRNA:   3'- ggCGCcUGCAGGUGCGCCG---UCGgCAG- -5'
9907 3' -61.8 NC_002641.1 + 73142 0.68 0.591101
Target:  5'- -aGCGGACGUUucgcacaaaCACGCGGCAaGCUu-- -3'
miRNA:   3'- ggCGCCUGCAG---------GUGCGCCGU-CGGcag -5'
9907 3' -61.8 NC_002641.1 + 126252 0.69 0.543357
Target:  5'- -gGCGGugGUCCGCGa-GCAGacggaCUGUCa -3'
miRNA:   3'- ggCGCCugCAGGUGCgcCGUC-----GGCAG- -5'
9907 3' -61.8 NC_002641.1 + 156220 0.69 0.543357
Target:  5'- -gGCGGugGUCCGCGa-GCAGacggaCUGUCa -3'
miRNA:   3'- ggCGCCugCAGGUGCgcCGUC-----GGCAG- -5'
9907 3' -61.8 NC_002641.1 + 60681 0.69 0.515314
Target:  5'- aCGCGGuugGUCUACGCGuacGCAauaucgacGCCGUCg -3'
miRNA:   3'- gGCGCCug-CAGGUGCGC---CGU--------CGGCAG- -5'
9907 3' -61.8 NC_002641.1 + 116619 0.7 0.478879
Target:  5'- aCGCGGACGuuUCCcC-CGGUGGCCaGUCu -3'
miRNA:   3'- gGCGCCUGC--AGGuGcGCCGUCGG-CAG- -5'
9907 3' -61.8 NC_002641.1 + 108903 0.7 0.461141
Target:  5'- cCCGCGGGCaugCCAUGCGGUuagcacccuuccAGCCa-- -3'
miRNA:   3'- -GGCGCCUGca-GGUGCGCCG------------UCGGcag -5'
9907 3' -61.8 NC_002641.1 + 49157 0.7 0.461141
Target:  5'- gCCGCaG-CGUCCGCaaguuCGGCGGCCGa- -3'
miRNA:   3'- -GGCGcCuGCAGGUGc----GCCGUCGGCag -5'
9907 3' -61.8 NC_002641.1 + 136554 1.11 0.000805
Target:  5'- cCCGCGGACGUCCACGCGGCAGCCGUCg -3'
miRNA:   3'- -GGCGCCUGCAGGUGCGCCGUCGGCAG- -5'
9907 3' -61.8 NC_002641.1 + 145919 1.11 0.000805
Target:  5'- cCCGCGGACGUCCACGCGGCAGCCGUCg -3'
miRNA:   3'- -GGCGCCUGCAGGUGCGCCGUCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.