miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9908	3'	-50.5	NC_002641.1	+	26363	0.66	0.995902
	Target:  5'- aCGCGCAUGUCCguuuUCUCGa-UCUUUa -3' miRNA:   3'- gGCGUGUAUAGGac--AGAGUgaAGGAG- -5'
9908	3'	-50.5	NC_002641.1	+	10918	0.66	0.993542
	Target:  5'- uCCGCGCAcGUUCUGUagaccCGCUUCUg- -3' miRNA:   3'- -GGCGUGUaUAGGACAga---GUGAAGGag -5'
9908	3'	-50.5	NC_002641.1	+	100792	0.67	0.988384
	Target:  5'- uUCGCAUuuAUAcaagcaugccaaaaUCCUGUCUaCAUgUCCUCg -3' miRNA:   3'- -GGCGUG--UAU--------------AGGACAGA-GUGaAGGAG- -5'
9908	3'	-50.5	NC_002641.1	+	128696	0.68	0.979587
	Target:  5'- uCCGCGCuAUGUCCgacaagcgGUCcgacCGCUUCCg- -3' miRNA:   3'- -GGCGUG-UAUAGGa-------CAGa---GUGAAGGag -5'
9908	3'	-50.5	NC_002641.1	+	153777	0.68	0.979587
	Target:  5'- uCCGCGCuAUGUCCgacaagcgGUCcgacCGCUUCCg- -3' miRNA:   3'- -GGCGUG-UAUAGGa-------CAGa---GUGAAGGag -5'
9908	3'	-50.5	NC_002641.1	+	24085	0.73	0.868725
	Target:  5'- gCCGCACGU-UUCUGUCUCGCauauaccaaugcagUUCUCg -3' miRNA:   3'- -GGCGUGUAuAGGACAGAGUGa-------------AGGAG- -5'
9908	3'	-50.5	NC_002641.1	+	146954	0.77	0.655452
	Target:  5'- gCgGCGCuccuUGUCgauuggCUGUCUCACUUCCUCc -3' miRNA:   3'- -GgCGUGu---AUAG------GACAGAGUGAAGGAG- -5'
9908	3'	-50.5	NC_002641.1	+	135518	0.77	0.655452
	Target:  5'- gCgGCGCuccuUGUCgauuggCUGUCUCACUUCCUCc -3' miRNA:   3'- -GgCGUGu---AUAG------GACAGAGUGAAGGAG- -5'
9908	3'	-50.5	NC_002641.1	+	147188	1	0.037087
	Target:  5'- cCCcCACAUAUCCUGUCUCACUUCCUCu -3' miRNA:   3'- -GGcGUGUAUAGGACAGAGUGAAGGAG- -5'
9908	3'	-50.5	NC_002641.1	+	135285	1.12	0.006323
	Target:  5'- cCCGCACAUAUCCUGUCUCACUUCCUCu -3' miRNA:   3'- -GGCGUGUAUAGGACAGAGUGAAGGAG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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