miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9914 5' -66.5 NC_002641.1 + 1958 0.67 0.369673
Target:  5'- cGUAGCUGCCuGUAGUCGUuagcagcuacguugUCCGcGGGa -3'
miRNA:   3'- uCGUCGGCGGcCGUCGGCG--------------AGGC-CCC- -5'
9914 5' -66.5 NC_002641.1 + 121764 0.67 0.369673
Target:  5'- cGUAGCUGCCuGUAGUCGUuagcagcuacguugUCCGcGGGa -3'
miRNA:   3'- uCGUCGGCGGcCGUCGGCG--------------AGGC-CCC- -5'
9914 5' -66.5 NC_002641.1 + 147896 0.68 0.36442
Target:  5'- uGGCAGCCaaugagaaucuGCCGGUGGUuaaGCUaacaCUGGGGa -3'
miRNA:   3'- -UCGUCGG-----------CGGCCGUCGg--CGA----GGCCCC- -5'
9914 5' -66.5 NC_002641.1 + 134577 0.68 0.36442
Target:  5'- uGGCAGCCaaugagaaucuGCCGGUGGUuaaGCUaacaCUGGGGa -3'
miRNA:   3'- -UCGUCGG-----------CGGCCGUCGg--CGA----GGCCCC- -5'
9914 5' -66.5 NC_002641.1 + 129612 0.68 0.342496
Target:  5'- aGGCAGCaccccgcgUGUCGGCAuCCGCUgugaCUGGGGc -3'
miRNA:   3'- -UCGUCG--------GCGGCCGUcGGCGA----GGCCCC- -5'
9914 5' -66.5 NC_002641.1 + 152860 0.68 0.342496
Target:  5'- aGGCAGCaccccgcgUGUCGGCAuCCGCUgugaCUGGGGc -3'
miRNA:   3'- -UCGUCG--------GCGGCCGUcGGCGA----GGCCCC- -5'
9914 5' -66.5 NC_002641.1 + 129214 0.85 0.021593
Target:  5'- gAGCGGCUGCCGGCGGCUGCU-CGGGa -3'
miRNA:   3'- -UCGUCGGCGGCCGUCGGCGAgGCCCc -5'
9914 5' -66.5 NC_002641.1 + 153259 0.85 0.021593
Target:  5'- gAGCGGCUGCCGGCGGCUGCU-CGGGa -3'
miRNA:   3'- -UCGUCGGCGGCCGUCGGCGAgGCCCc -5'
9914 5' -66.5 NC_002641.1 + 153438 1.08 0.000424
Target:  5'- gAGCAGCCGCCGGCAGCCGCUCCGGGGc -3'
miRNA:   3'- -UCGUCGGCGGCCGUCGGCGAGGCCCC- -5'
9914 5' -66.5 NC_002641.1 + 129034 1.08 0.000424
Target:  5'- gAGCAGCCGCCGGCAGCCGCUCCGGGGc -3'
miRNA:   3'- -UCGUCGGCGGCCGUCGGCGAGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.