Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9916 | 5' | -63.6 | NC_002641.1 | + | 75264 | 0.66 | 0.592944 |
Target: 5'- aUCUC-CCGCUU--GUUUGGUCGCCGc -3' miRNA: 3'- gAGAGcGGCGAGguCGAGCCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 150619 | 0.66 | 0.564172 |
Target: 5'- gUC-CGUCGUUuugggaUCAGCU-GGCCGCCGa -3' miRNA: 3'- gAGaGCGGCGA------GGUCGAgCCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 131854 | 0.66 | 0.564172 |
Target: 5'- gUC-CGUCGUUuugggaUCAGCU-GGCCGCCGa -3' miRNA: 3'- gAGaGCGGCGA------GGUCGAgCCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 153422 | 0.67 | 0.545194 |
Target: 5'- -cCUCGCCGCUugCCAGUgggaaaaGuGCCGCgGg -3' miRNA: 3'- gaGAGCGGCGA--GGUCGag-----C-CGGCGgC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 129051 | 0.67 | 0.545194 |
Target: 5'- -cCUCGCCGCUugCCAGUgggaaaaGuGCCGCgGg -3' miRNA: 3'- gaGAGCGGCGA--GGUCGag-----C-CGGCGgC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 48943 | 0.67 | 0.526427 |
Target: 5'- aCUUUgGCCGaUCUcgaacaGGCugcaUCGGCCGCCGa -3' miRNA: 3'- -GAGAgCGGCgAGG------UCG----AGCCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 602 | 0.67 | 0.526427 |
Target: 5'- uUCUCGCCgGCUCUcugaUCGGCCcucuaugugaGCCGa -3' miRNA: 3'- gAGAGCGG-CGAGGucg-AGCCGG----------CGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 123120 | 0.67 | 0.526427 |
Target: 5'- uUCUCGCCgGCUCUcugaUCGGCCcucuaugugaGCCGa -3' miRNA: 3'- gAGAGCGG-CGAGGucg-AGCCGG----------CGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 42741 | 0.67 | 0.507907 |
Target: 5'- cCUCUCGCUGCauauUCCAuCUCGGCUaaGCa- -3' miRNA: 3'- -GAGAGCGGCG----AGGUcGAGCCGG--CGgc -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 131735 | 0.68 | 0.489669 |
Target: 5'- aCUCaUGCUGC-CCAGCUCgcacaaGGUCGCUGu -3' miRNA: 3'- -GAGaGCGGCGaGGUCGAG------CCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 49161 | 0.69 | 0.436928 |
Target: 5'- aUCU-GCCGCagcgUCCgcaAGUUCGGCgGCCGa -3' miRNA: 3'- gAGAgCGGCG----AGG---UCGAGCCGgCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 157392 | 0.69 | 0.403638 |
Target: 5'- uUCguacagCGCCGUUgCCAGCga-GCCGCCGa -3' miRNA: 3'- gAGa-----GCGGCGA-GGUCGagcCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 125080 | 0.69 | 0.403638 |
Target: 5'- uUCguacagCGCCGUUgCCAGCga-GCCGCCGa -3' miRNA: 3'- gAGa-----GCGGCGA-GGUCGagcCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 138315 | 0.7 | 0.356823 |
Target: 5'- cCUCUCGCCaaaCUCCuGCUgaUGGCgGCCu -3' miRNA: 3'- -GAGAGCGGc--GAGGuCGA--GCCGgCGGc -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 125273 | 0.72 | 0.263032 |
Target: 5'- -gCUCGCCGC---AGCUCuGCCGCCGu -3' miRNA: 3'- gaGAGCGGCGaggUCGAGcCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 157199 | 0.72 | 0.263032 |
Target: 5'- -gCUCGCCGC---AGCUCuGCCGCCGu -3' miRNA: 3'- gaGAGCGGCGaggUCGAGcCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 157225 | 1.07 | 0.000953 |
Target: 5'- uCUCUCGCCGCUCCAGCUCGGCCGCCGc -3' miRNA: 3'- -GAGAGCGGCGAGGUCGAGCCGGCGGC- -5' |
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9916 | 5' | -63.6 | NC_002641.1 | + | 125247 | 1.07 | 0.000953 |
Target: 5'- uCUCUCGCCGCUCCAGCUCGGCCGCCGc -3' miRNA: 3'- -GAGAGCGGCGAGGUCGAGCCGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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