miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9917 3' -63.8 NC_002641.1 + 85167 0.65 0.567218
Target:  5'- uGUGG-CAGCgGCUGCGGCCAAacgaauaaaaaauUGGCa -3'
miRNA:   3'- -CGCCgGUCG-CGACGCCGGUUc------------GCCGa -5'
9917 3' -63.8 NC_002641.1 + 49306 0.67 0.504628
Target:  5'- uCGuGCgGGCGCcuauaUGUGGgUAAGCGGCa -3'
miRNA:   3'- cGC-CGgUCGCG-----ACGCCgGUUCGCCGa -5'
9917 3' -63.8 NC_002641.1 + 153251 0.68 0.407837
Target:  5'- -aGGCCc-CGgaGCGGCUGccGGCGGCUg -3'
miRNA:   3'- cgCCGGucGCgaCGCCGGU--UCGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 153711 0.71 0.302893
Target:  5'- -aGGCCAaacgccuccGcCGC-GUGGCCGAGUGGCUa -3'
miRNA:   3'- cgCCGGU---------C-GCGaCGCCGGUUCGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 128761 0.71 0.302893
Target:  5'- -aGGCCAaacgccuccGcCGC-GUGGCCGAGUGGCUa -3'
miRNA:   3'- cgCCGGU---------C-GCGaCGCCGGUUCGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 125451 0.75 0.161144
Target:  5'- gGCGG-CAGaGCUGCGG-CGAGCGGCg -3'
miRNA:   3'- -CGCCgGUCgCGACGCCgGUUCGCCGa -5'
9917 3' -63.8 NC_002641.1 + 157021 0.75 0.161144
Target:  5'- gGCGG-CAGaGCUGCGG-CGAGCGGCg -3'
miRNA:   3'- -CGCCgGUCgCGACGCCgGUUCGCCGa -5'
9917 3' -63.8 NC_002641.1 + 5662 0.76 0.142553
Target:  5'- aGCGGCCgaucAGCGCgcgGCgGGCCGAcCGGCUc -3'
miRNA:   3'- -CGCCGG----UCGCGa--CG-CCGGUUcGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 118060 0.76 0.142553
Target:  5'- aGCGGCCgaucAGCGCgcgGCgGGCCGAcCGGCUc -3'
miRNA:   3'- -CGCCGG----UCGCGa--CG-CCGGUUcGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 124855 0.77 0.108385
Target:  5'- uGCGGUguauCAGCGUcGCGGCCuGGUGGCUg -3'
miRNA:   3'- -CGCCG----GUCGCGaCGCCGGuUCGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 157617 0.77 0.108385
Target:  5'- uGCGGUguauCAGCGUcGCGGCCuGGUGGCUg -3'
miRNA:   3'- -CGCCG----GUCGCGaCGCCGGuUCGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 157440 1.08 0.000602
Target:  5'- cGCGGCCAGCGCUGCGGCCAAGCGGCUu -3'
miRNA:   3'- -CGCCGGUCGCGACGCCGGUUCGCCGA- -5'
9917 3' -63.8 NC_002641.1 + 125032 1.08 0.000602
Target:  5'- cGCGGCCAGCGCUGCGGCCAAGCGGCUu -3'
miRNA:   3'- -CGCCGGUCGCGACGCCGGUUCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.