Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9918 | 3' | -61.9 | NC_002641.1 | + | 6177 | 0.66 | 0.683614 |
Target: 5'- --uGGGGaucucccuccggACCGcGCGCCGgGCGCGGu -3' miRNA: 3'- cggUCCCga----------UGGU-CGCGGCgCGUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 116890 | 0.66 | 0.683614 |
Target: 5'- --uGGGGaucucccuccggACCGcGCGCCGgGCGCGGu -3' miRNA: 3'- cggUCCCga----------UGGU-CGCGGCgCGUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 104292 | 0.66 | 0.677806 |
Target: 5'- uGCCcagAGGGUcGCCgauacAGUGCCGcCGCACu- -3' miRNA: 3'- -CGG---UCCCGaUGG-----UCGCGGC-GCGUGcc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 25831 | 0.66 | 0.658365 |
Target: 5'- uGCCAuGGauaaUGCCAGCaGCuUGCGgGCGGc -3' miRNA: 3'- -CGGUcCCg---AUGGUCG-CG-GCGCgUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 157416 | 0.67 | 0.638847 |
Target: 5'- aGCCcuGGCcGCCAGCcaccagGCCGCGaCGCu- -3' miRNA: 3'- -CGGucCCGaUGGUCG------CGGCGC-GUGcc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 125057 | 0.67 | 0.638847 |
Target: 5'- aGCCcuGGCcGCCAGCcaccagGCCGCGaCGCu- -3' miRNA: 3'- -CGGucCCGaUGGUCG------CGGCGC-GUGcc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 153252 | 0.67 | 0.638847 |
Target: 5'- gGCCccggAGcGGCUGCCGGCGgCUGCu--CGGg -3' miRNA: 3'- -CGG----UC-CCGAUGGUCGC-GGCGcguGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 84430 | 0.67 | 0.61931 |
Target: 5'- uGCCAGGGgaAUCgaAGCGCCcGgGaCugGGc -3' miRNA: 3'- -CGGUCCCgaUGG--UCGCGG-CgC-GugCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 129221 | 0.67 | 0.61931 |
Target: 5'- aGCCccggAGcGGCUGCCGGCGgCUGCu--CGGg -3' miRNA: 3'- -CGG----UC-CCGAUGGUCGC-GGCGcguGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 120172 | 0.67 | 0.609552 |
Target: 5'- aGCCGGGGCggucucagGCCGGacaguaGCCGgGaC-CGGu -3' miRNA: 3'- -CGGUCCCGa-------UGGUCg-----CGGCgC-GuGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 125085 | 0.67 | 0.609552 |
Target: 5'- aGCgAGGaGC-ACCGuGCGCgGCGCugGu -3' miRNA: 3'- -CGgUCC-CGaUGGU-CGCGgCGCGugCc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 157388 | 0.67 | 0.609552 |
Target: 5'- aGCgAGGaGC-ACCGuGCGCgGCGCugGu -3' miRNA: 3'- -CGgUCC-CGaUGGU-CGCGgCGCGugCc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 3551 | 0.67 | 0.609552 |
Target: 5'- aGCCGGGGCggucucagGCCGGacaguaGCCGgGaC-CGGu -3' miRNA: 3'- -CGGUCCCGa-------UGGUCg-----CGGCgC-GuGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 39708 | 0.67 | 0.590087 |
Target: 5'- cGCCAGcGCUACCuuugauGGaUGCUGCGCGCc- -3' miRNA: 3'- -CGGUCcCGAUGG------UC-GCGGCGCGUGcc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 154717 | 0.67 | 0.589116 |
Target: 5'- gGCCGGGuaUuuuagcaaaauccAUCAGUGCCGCG-GCGGc -3' miRNA: 3'- -CGGUCCcgA-------------UGGUCGCGGCGCgUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 127755 | 0.67 | 0.589116 |
Target: 5'- gGCCGGGuaUuuuagcaaaauccAUCAGUGCCGCG-GCGGc -3' miRNA: 3'- -CGGUCCcgA-------------UGGUCGCGGCGCgUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 154462 | 0.68 | 0.570734 |
Target: 5'- -gCGGGGCaauuucuccCCGGCGaCC-CGCACGGa -3' miRNA: 3'- cgGUCCCGau-------GGUCGC-GGcGCGUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 128010 | 0.68 | 0.570734 |
Target: 5'- -gCGGGGCaauuucuccCCGGCGaCC-CGCACGGa -3' miRNA: 3'- cgGUCCCGau-------GGUCGC-GGcGCGUGCC- -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 152450 | 0.68 | 0.561113 |
Target: 5'- cCCAcGGGuCUGCCAGagGCCGUgcgGCACGu -3' miRNA: 3'- cGGU-CCC-GAUGGUCg-CGGCG---CGUGCc -5' |
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9918 | 3' | -61.9 | NC_002641.1 | + | 66267 | 0.68 | 0.561113 |
Target: 5'- gGUuuGGGCUAUCcGCGCaGCGCACa- -3' miRNA: 3'- -CGguCCCGAUGGuCGCGgCGCGUGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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