Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9918 | 5' | -56.7 | NC_002641.1 | + | 157599 | 0.66 | 0.874142 |
Target: 5'- ---cGGCcuGGugGCUGGCGGCCaGGGCu -3' miRNA: 3'- aagaCCG--UCugUGGCCGCUGGgUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 124873 | 0.66 | 0.874142 |
Target: 5'- ---cGGCcuGGugGCUGGCGGCCaGGGCu -3' miRNA: 3'- aagaCCG--UCugUGGCCGCUGGgUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 128201 | 0.66 | 0.871938 |
Target: 5'- -aCUGGUGGACACUGGgGGuaugauggggagucCCCGAu- -3' miRNA: 3'- aaGACCGUCUGUGGCCgCU--------------GGGUUug -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 154271 | 0.66 | 0.871938 |
Target: 5'- -aCUGGUGGACACUGGgGGuaugauggggagucCCCGAu- -3' miRNA: 3'- aaGACCGUCUGUGGCCgCU--------------GGGUUug -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 69449 | 0.66 | 0.866718 |
Target: 5'- --gUGGCAggucGAgACUGGCGAUggCCAGGCg -3' miRNA: 3'- aagACCGU----CUgUGGCCGCUG--GGUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 104103 | 0.66 | 0.859079 |
Target: 5'- ---cGGCGGcACAuguaUCGGCGACCCucugGGCa -3' miRNA: 3'- aagaCCGUC-UGU----GGCCGCUGGGu---UUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 153825 | 0.67 | 0.800173 |
Target: 5'- --gUGGCccgGGACGCCcuaGGCGACCCc--- -3' miRNA: 3'- aagACCG---UCUGUGG---CCGCUGGGuuug -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 128647 | 0.67 | 0.800173 |
Target: 5'- --gUGGCccgGGACGCCcuaGGCGACCCc--- -3' miRNA: 3'- aagACCG---UCUGUGG---CCGCUGGGuuug -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 154018 | 0.67 | 0.791073 |
Target: 5'- aUCUgGGCGGGguCGCCuagGGCGuCCCGGGCc -3' miRNA: 3'- aAGA-CCGUCU--GUGG---CCGCuGGGUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 128455 | 0.67 | 0.791073 |
Target: 5'- aUCUgGGCGGGguCGCCuagGGCGuCCCGGGCc -3' miRNA: 3'- aAGA-CCGUCU--GUGG---CCGCuGGGUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 95065 | 0.68 | 0.776215 |
Target: 5'- gUC-GGCAGACuguccuguaacauguACCGuuauaugucaGCGACCCAGGCc -3' miRNA: 3'- aAGaCCGUCUG---------------UGGC----------CGCUGGGUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 154478 | 0.68 | 0.772447 |
Target: 5'- aUCUgGGCggaggaucgcgGGGCAauuucuccCCGGCGACCCGcACg -3' miRNA: 3'- aAGA-CCG-----------UCUGU--------GGCCGCUGGGUuUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 127994 | 0.68 | 0.772447 |
Target: 5'- aUCUgGGCggaggaucgcgGGGCAauuucuccCCGGCGACCCGcACg -3' miRNA: 3'- aAGA-CCG-----------UCUGU--------GGCCGCUGGGUuUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 60555 | 0.68 | 0.762938 |
Target: 5'- ---cGGCGGACACUGGgGgaaaaggccaACCCAAAg -3' miRNA: 3'- aagaCCGUCUGUGGCCgC----------UGGGUUUg -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 74688 | 0.68 | 0.733743 |
Target: 5'- uUUCUgGGUGGGCGCUGGCGuAUCUAAGg -3' miRNA: 3'- -AAGA-CCGUCUGUGGCCGC-UGGGUUUg -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 136308 | 0.69 | 0.693605 |
Target: 5'- gUC-GGCAGACACCG-CGuuguauccgaACCCGGGCu -3' miRNA: 3'- aAGaCCGUCUGUGGCcGC----------UGGGUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 146165 | 0.69 | 0.693605 |
Target: 5'- gUC-GGCAGACACCG-CGuuguauccgaACCCGGGCu -3' miRNA: 3'- aAGaCCGUCUGUGGCcGC----------UGGGUUUG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 52404 | 0.7 | 0.642323 |
Target: 5'- --aUGGCGGGCGCCGG--GCCCGAc- -3' miRNA: 3'- aagACCGUCUGUGGCCgcUGGGUUug -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 153298 | 0.71 | 0.560236 |
Target: 5'- aUCUGGCAGACGCUuGCGuCCUGGccuGCg -3' miRNA: 3'- aAGACCGUCUGUGGcCGCuGGGUU---UG- -5' |
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9918 | 5' | -56.7 | NC_002641.1 | + | 129175 | 0.71 | 0.560236 |
Target: 5'- aUCUGGCAGACGCUuGCGuCCUGGccuGCg -3' miRNA: 3'- aAGACCGUCUGUGGcCGCuGGGUU---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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