miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
992 5' -55.9 NC_000902.1 + 32170 0.66 0.732803
Target:  5'- cGCGAGauggCUGGCagaguggcaaaACUGGAAgcuGACGCCGc -3'
miRNA:   3'- -UGUUCga--GGCCG-----------UGGCCUU---UUGCGGC- -5'
992 5' -55.9 NC_000902.1 + 27308 0.66 0.722313
Target:  5'- cACcuGCUCCGGUACCGuGcgugaaGCCa -3'
miRNA:   3'- -UGuuCGAGGCCGUGGC-Cuuuug-CGGc -5'
992 5' -55.9 NC_000902.1 + 38374 0.66 0.721259
Target:  5'- aGCAGG-UCCGGCuggGCCgaagggugauaagGGAGAGCGCgGu -3'
miRNA:   3'- -UGUUCgAGGCCG---UGG-------------CCUUUUGCGgC- -5'
992 5' -55.9 NC_000902.1 + 49525 0.66 0.711737
Target:  5'- cGC-AGCUCau-CGCCGGGAAGCuGCCa -3'
miRNA:   3'- -UGuUCGAGgccGUGGCCUUUUG-CGGc -5'
992 5' -55.9 NC_000902.1 + 14501 0.66 0.701083
Target:  5'- gACGcAGCUuaaCCGcGCACUGGAAa--GCCGa -3'
miRNA:   3'- -UGU-UCGA---GGC-CGUGGCCUUuugCGGC- -5'
992 5' -55.9 NC_000902.1 + 45935 0.66 0.689288
Target:  5'- gGCGGuGCUaaaacacCUGGCACCGGcgcuAAUGCCa -3'
miRNA:   3'- -UGUU-CGA-------GGCCGUGGCCuu--UUGCGGc -5'
992 5' -55.9 NC_000902.1 + 39987 0.67 0.624172
Target:  5'- -uGAGUUCUGGUguaauaacaccaaACCGGAAAugGCa- -3'
miRNA:   3'- ugUUCGAGGCCG-------------UGGCCUUUugCGgc -5'
992 5' -55.9 NC_000902.1 + 34622 0.67 0.614375
Target:  5'- -gGGGCUCaGGCGCUGGcAAAUGCUu -3'
miRNA:   3'- ugUUCGAGgCCGUGGCCuUUUGCGGc -5'
992 5' -55.9 NC_000902.1 + 50300 0.68 0.603504
Target:  5'- gACAGGgauaUCCGuuACCGGGAGaaguggcgcguACGCCGg -3'
miRNA:   3'- -UGUUCg---AGGCcgUGGCCUUU-----------UGCGGC- -5'
992 5' -55.9 NC_000902.1 + 31151 0.68 0.571068
Target:  5'- -uGAGUUCaauCACCGGAAGACGCuCGa -3'
miRNA:   3'- ugUUCGAGgccGUGGCCUUUUGCG-GC- -5'
992 5' -55.9 NC_000902.1 + 40435 0.68 0.560343
Target:  5'- gGCAuucuGCaaUGGCACCGGAGccAGCGUCa -3'
miRNA:   3'- -UGUu---CGagGCCGUGGCCUU--UUGCGGc -5'
992 5' -55.9 NC_000902.1 + 40347 0.7 0.477139
Target:  5'- cGCuGGCUCCGGUGCCauuGcAGAAUGCCa -3'
miRNA:   3'- -UGuUCGAGGCCGUGGc--C-UUUUGCGGc -5'
992 5' -55.9 NC_000902.1 + 25183 0.71 0.437864
Target:  5'- --cGGCUCCGGagcuGCCGGu--GCGCCc -3'
miRNA:   3'- uguUCGAGGCCg---UGGCCuuuUGCGGc -5'
992 5' -55.9 NC_000902.1 + 38617 0.71 0.427391
Target:  5'- gGCAGGC-CCGGUgggggcgACCGGAccucAGGgGCCGa -3'
miRNA:   3'- -UGUUCGaGGCCG-------UGGCCU----UUUgCGGC- -5'
992 5' -55.9 NC_000902.1 + 23980 0.71 0.418934
Target:  5'- --uGGCUUCuGCACCGGAAGGCGaugaCGg -3'
miRNA:   3'- uguUCGAGGcCGUGGCCUUUUGCg---GC- -5'
992 5' -55.9 NC_000902.1 + 52860 0.71 0.391492
Target:  5'- uACAGGCgggugaauuUCUGGCACauauggCGGAGAACaGCCGa -3'
miRNA:   3'- -UGUUCG---------AGGCCGUG------GCCUUUUG-CGGC- -5'
992 5' -55.9 NC_000902.1 + 25108 0.72 0.348441
Target:  5'- gGC-AGCUCCGGaGCCGGAAGGCaucGCgGg -3'
miRNA:   3'- -UGuUCGAGGCCgUGGCCUUUUG---CGgC- -5'
992 5' -55.9 NC_000902.1 + 28831 0.73 0.301386
Target:  5'- uGCAuGCUCCGGaacaACUGGcgcuGCGCCGg -3'
miRNA:   3'- -UGUuCGAGGCCg---UGGCCuuu-UGCGGC- -5'
992 5' -55.9 NC_000902.1 + 37596 0.76 0.210964
Target:  5'- -aAGGCcaggCUGGCGCaGGAGAGCGCCGg -3'
miRNA:   3'- ugUUCGa---GGCCGUGgCCUUUUGCGGC- -5'
992 5' -55.9 NC_000902.1 + 50414 1.08 0.001217
Target:  5'- gACAAGCUCCGGCACCGGAAAACGCCGc -3'
miRNA:   3'- -UGUUCGAGGCCGUGGCCUUUUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.