miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9922 3' -53.1 NC_002641.1 + 5129 0.66 0.966645
Target:  5'- uGAAugCCuauGCGGGCg--GUGGCa-- -3'
miRNA:   3'- uCUUugGGu--CGCCCGuuaCAUCGaca -5'
9922 3' -53.1 NC_002641.1 + 118594 0.66 0.966645
Target:  5'- uGAAugCCuauGCGGGCg--GUGGCa-- -3'
miRNA:   3'- uCUUugGGu--CGCCCGuuaCAUCGaca -5'
9922 3' -53.1 NC_002641.1 + 83827 0.66 0.959666
Target:  5'- cGGGAACauauaCGGaggaucuGGGCAGUGUGGuCUGUu -3'
miRNA:   3'- -UCUUUGg----GUCg------CCCGUUACAUC-GACA- -5'
9922 3' -53.1 NC_002641.1 + 91080 0.68 0.9037
Target:  5'- cAGAcaAACCCGGCauccugguuagaGGGCAGgugGGCUGg -3'
miRNA:   3'- -UCU--UUGGGUCG------------CCCGUUacaUCGACa -5'
9922 3' -53.1 NC_002641.1 + 99912 0.69 0.89025
Target:  5'- uGGAACaaaUAGCcagacgaacgGGGCGcgGUAGCUGUa -3'
miRNA:   3'- uCUUUGg--GUCG----------CCCGUuaCAUCGACA- -5'
9922 3' -53.1 NC_002641.1 + 50467 0.69 0.86827
Target:  5'- cGAucAUCCGGCGGuGU-AUGUGGCUGg -3'
miRNA:   3'- uCUu-UGGGUCGCC-CGuUACAUCGACa -5'
9922 3' -53.1 NC_002641.1 + 121652 0.75 0.564619
Target:  5'- uAGAu-CCCuGCGGaCAAUGUAGCUGUu -3'
miRNA:   3'- -UCUuuGGGuCGCCcGUUACAUCGACA- -5'
9922 3' -53.1 NC_002641.1 + 2070 0.75 0.564619
Target:  5'- uAGAu-CCCuGCGGaCAAUGUAGCUGUu -3'
miRNA:   3'- -UCUuuGGGuCGCCcGUUACAUCGACA- -5'
9922 3' -53.1 NC_002641.1 + 121971 0.8 0.303233
Target:  5'- cGGAcucAUUCAGCGGGCAAUGUAGaCUGUg -3'
miRNA:   3'- uCUU---UGGGUCGCCCGUUACAUC-GACA- -5'
9922 3' -53.1 NC_002641.1 + 1751 0.8 0.303233
Target:  5'- cGGAcucAUUCAGCGGGCAAUGUAGaCUGUg -3'
miRNA:   3'- uCUU---UGGGUCGCCCGUUACAUC-GACA- -5'
9922 3' -53.1 NC_002641.1 + 122476 0.98 0.023275
Target:  5'- cAGAAACCCAGCGGGCAAcGUGGCUGUu -3'
miRNA:   3'- -UCUUUGGGUCGCCCGUUaCAUCGACA- -5'
9922 3' -53.1 NC_002641.1 + 1246 0.98 0.023275
Target:  5'- cAGAAACCCAGCGGGCAAcGUGGCUGUu -3'
miRNA:   3'- -UCUUUGGGUCGCCCGUUaCAUCGACA- -5'
9922 3' -53.1 NC_002641.1 + 1527 1.07 0.006258
Target:  5'- cAGAAACCCAGCGGGCAAUGUAGCUGUc -3'
miRNA:   3'- -UCUUUGGGUCGCCCGUUACAUCGACA- -5'
9922 3' -53.1 NC_002641.1 + 122196 1.07 0.006258
Target:  5'- cAGAAACCCAGCGGGCAAUGUAGCUGUc -3'
miRNA:   3'- -UCUUUGGGUCGCCCGUUACAUCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.