Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9922 | 5' | -50.1 | NC_002641.1 | + | 121468 | 0.7 | 0.943421 |
Target: 5'- -aACAG-CUACAUUGUCCGCagGGAUc -3' miRNA: 3'- ugUGUCaGAUGUAACGGGCGa-CUUAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 110804 | 0.7 | 0.938536 |
Target: 5'- aACACAGaCUGCAacucCCCGCUGcAAUGa -3' miRNA: 3'- -UGUGUCaGAUGUaac-GGGCGAC-UUAC- -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 121784 | 0.72 | 0.896969 |
Target: 5'- -aGCAG-CUACGUUGUCCGCgGGAUu -3' miRNA: 3'- ugUGUCaGAUGUAACGGGCGaCUUAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 1282 | 0.74 | 0.825626 |
Target: 5'- -gACGGUCUAUGUUGUaCGCUGAAUa -3' miRNA: 3'- ugUGUCAGAUGUAACGgGCGACUUAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 122288 | 0.76 | 0.718018 |
Target: 5'- gGCaACAGcC-ACGUUGCCCGCUGggUu -3' miRNA: 3'- -UG-UGUCaGaUGUAACGGGCGACuuAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 122010 | 0.85 | 0.280728 |
Target: 5'- -gACAG-CUACAUUGCCCGCUGggUu -3' miRNA: 3'- ugUGUCaGAUGUAACGGGCGACuuAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 1561 | 1.09 | 0.009511 |
Target: 5'- uACACAGUCUACAUUGCCCGCUGAAUGa -3' miRNA: 3'- -UGUGUCAGAUGUAACGGGCGACUUAC- -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 122162 | 1.09 | 0.009511 |
Target: 5'- uACACAGUCUACAUUGCCCGCUGAAUGa -3' miRNA: 3'- -UGUGUCAGAUGUAACGGGCGACUUAC- -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 1712 | 0.85 | 0.280728 |
Target: 5'- -gACAG-CUACAUUGCCCGCUGggUu -3' miRNA: 3'- ugUGUCaGAUGUAACGGGCGACuuAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 1435 | 0.76 | 0.718018 |
Target: 5'- gGCaACAGcC-ACGUUGCCCGCUGggUu -3' miRNA: 3'- -UG-UGUCaGaUGUAACGGGCGACuuAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 122440 | 0.74 | 0.825626 |
Target: 5'- -gACGGUCUAUGUUGUaCGCUGAAUa -3' miRNA: 3'- ugUGUCAGAUGUAACGgGCGACUUAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 81981 | 0.72 | 0.896969 |
Target: 5'- gGCAUAcGUCU-UAUUGCCCGCaccguUGGAUGg -3' miRNA: 3'- -UGUGU-CAGAuGUAACGGGCG-----ACUUAC- -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 1938 | 0.72 | 0.896969 |
Target: 5'- -aGCAG-CUACGUUGUCCGCgGGAUu -3' miRNA: 3'- ugUGUCaGAUGUAACGGGCGaCUUAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 2255 | 0.7 | 0.943421 |
Target: 5'- -aACAG-CUACAUUGUCCGCagGGAUc -3' miRNA: 3'- ugUGUCaGAUGUAACGGGCGa-CUUAc -5' |
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9922 | 5' | -50.1 | NC_002641.1 | + | 51679 | 0.67 | 0.988375 |
Target: 5'- ---gGGUCUGgAUUGUUgGCUGAAUGc -3' miRNA: 3'- ugugUCAGAUgUAACGGgCGACUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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