miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9933 5' -46.8 NC_002641.1 + 12261 0.66 0.99995
Target:  5'- gGUGgggCUGGAGaGCcgGGCGGAaCGCUg -3'
miRNA:   3'- -CGUa--GACUUUaCGuaCUGCCUaGUGA- -5'
9933 5' -46.8 NC_002641.1 + 66570 0.66 0.99995
Target:  5'- --uUCUG-GAUGCAUGG-GGGUCugUa -3'
miRNA:   3'- cguAGACuUUACGUACUgCCUAGugA- -5'
9933 5' -46.8 NC_002641.1 + 141888 0.66 0.999933
Target:  5'- aUAUCUGuuuuuGUGCAauACGGAUCAa- -3'
miRNA:   3'- cGUAGACuu---UACGUacUGCCUAGUga -5'
9933 5' -46.8 NC_002641.1 + 18522 0.66 0.999847
Target:  5'- uGCA--UGAAAUGCAUcGCGGAUauuaGCa -3'
miRNA:   3'- -CGUagACUUUACGUAcUGCCUAg---UGa -5'
9933 5' -46.8 NC_002641.1 + 92481 0.67 0.999746
Target:  5'- cGCAUCgcccAUGC-UGGCGGAaCGCUc -3'
miRNA:   3'- -CGUAGacuuUACGuACUGCCUaGUGA- -5'
9933 5' -46.8 NC_002641.1 + 69905 0.67 0.999746
Target:  5'- cGCuuuUCUGAAAUcGCGU--CGGGUCAUUa -3'
miRNA:   3'- -CGu--AGACUUUA-CGUAcuGCCUAGUGA- -5'
9933 5' -46.8 NC_002641.1 + 89611 0.67 0.99959
Target:  5'- uGCAauuucUCUGGGAUGcCAUGuucuUGGGUCAUUu -3'
miRNA:   3'- -CGU-----AGACUUUAC-GUACu---GCCUAGUGA- -5'
9933 5' -46.8 NC_002641.1 + 91023 0.67 0.999473
Target:  5'- uGCGUgUGGGcgaauacAUaGCAUcGGCGGAUCGCa -3'
miRNA:   3'- -CGUAgACUU-------UA-CGUA-CUGCCUAGUGa -5'
9933 5' -46.8 NC_002641.1 + 104409 0.68 0.999357
Target:  5'- cGCGUUUucuGGUGCAcaUGAUGGAUCAa- -3'
miRNA:   3'- -CGUAGAcu-UUACGU--ACUGCCUAGUga -5'
9933 5' -46.8 NC_002641.1 + 127720 0.68 0.999357
Target:  5'- gGCAuUCUGGAGcguagaGCAUGGCGGG-CGCc -3'
miRNA:   3'- -CGU-AGACUUUa-----CGUACUGCCUaGUGa -5'
9933 5' -46.8 NC_002641.1 + 64713 0.68 0.999203
Target:  5'- aGCAUCUGGAggGCGgcucagcucGGCGGA-CAUg -3'
miRNA:   3'- -CGUAGACUUuaCGUa--------CUGCCUaGUGa -5'
9933 5' -46.8 NC_002641.1 + 11164 0.68 0.999203
Target:  5'- uGCAUCUGcGGAaGCAuucaugaauUGGuCGGAUCGCg -3'
miRNA:   3'- -CGUAGAC-UUUaCGU---------ACU-GCCUAGUGa -5'
9933 5' -46.8 NC_002641.1 + 70993 0.69 0.998226
Target:  5'- cGCAUCUcaGAAGcgGCAUGGCGaaAUCGCg -3'
miRNA:   3'- -CGUAGA--CUUUa-CGUACUGCc-UAGUGa -5'
9933 5' -46.8 NC_002641.1 + 154753 0.71 0.992153
Target:  5'- gGCAuUCUGGAGcguagaGCAUGGCGGggCGCc -3'
miRNA:   3'- -CGU-AGACUUUa-----CGUACUGCCuaGUGa -5'
9933 5' -46.8 NC_002641.1 + 144865 0.79 0.791245
Target:  5'- aGCGUCUGAGAUGUcgGACGG--UACa -3'
miRNA:   3'- -CGUAGACUUUACGuaCUGCCuaGUGa -5'
9933 5' -46.8 NC_002641.1 + 13767 0.91 0.263194
Target:  5'- ----aUGAAAUGCAUGACGGAUCACUa -3'
miRNA:   3'- cguagACUUUACGUACUGCCUAGUGA- -5'
9933 5' -46.8 NC_002641.1 + 13620 1.12 0.015507
Target:  5'- gGCAUCUGAAAUGCAUGACGGAUCACUa -3'
miRNA:   3'- -CGUAGACUUUACGUACUGCCUAGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.