miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9935 3' -58.6 NC_002641.1 + 148953 0.66 0.8441
Target:  5'- gCGCgGAAg--GCGGcaugugaGCUGCGGCGc -3'
miRNA:   3'- gGCGgCUUgaaCGCCug-----CGACGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 133520 0.66 0.8441
Target:  5'- gCGCgGAAg--GCGGcaugugaGCUGCGGCGc -3'
miRNA:   3'- gGCGgCUUgaaCGCCug-----CGACGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 4154 0.66 0.843314
Target:  5'- gCGCCGggUccgugUGCGGACGUuucgcuucgacucUGcCGGUc -3'
miRNA:   3'- gGCGGCuuGa----ACGCCUGCG-------------AC-GCCGu -5'
9935 3' -58.6 NC_002641.1 + 119569 0.66 0.843314
Target:  5'- gCGCCGggUccgugUGCGGACGUuucgcuucgacucUGcCGGUc -3'
miRNA:   3'- gGCGGCuuGa----ACGCCUGCG-------------AC-GCCGu -5'
9935 3' -58.6 NC_002641.1 + 154397 0.66 0.841734
Target:  5'- cCCGCCGugagggggcugccuGACgagGCGGGCGCUGauuuacGCu -3'
miRNA:   3'- -GGCGGC--------------UUGaa-CGCCUGCGACgc----CGu -5'
9935 3' -58.6 NC_002641.1 + 128075 0.66 0.841734
Target:  5'- cCCGCCGugagggggcugccuGACgagGCGGGCGCUGauuuacGCu -3'
miRNA:   3'- -GGCGGC--------------UUGaa-CGCCUGCGACgc----CGu -5'
9935 3' -58.6 NC_002641.1 + 37109 0.66 0.83615
Target:  5'- aCCGUC--ACUUGUGGAgGCggacGgGGCAg -3'
miRNA:   3'- -GGCGGcuUGAACGCCUgCGa---CgCCGU- -5'
9935 3' -58.6 NC_002641.1 + 5673 0.66 0.818887
Target:  5'- gCGCCGGGaugaGCGGccgaucaGCGC-GCGGCGg -3'
miRNA:   3'- gGCGGCUUgaa-CGCC-------UGCGaCGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 118049 0.66 0.818887
Target:  5'- gCGCCGGGaugaGCGGccgaucaGCGC-GCGGCGg -3'
miRNA:   3'- gGCGGCUUgaa-CGCC-------UGCGaCGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 117609 0.66 0.802654
Target:  5'- uUCGCCGAGCUcuuuaugcGCGGugGggGUGaGCGc -3'
miRNA:   3'- -GGCGGCUUGAa-------CGCCugCgaCGC-CGU- -5'
9935 3' -58.6 NC_002641.1 + 29942 0.66 0.802654
Target:  5'- gCCGCCGucgucuccGCaUUGC---CGCUGCGGCGa -3'
miRNA:   3'- -GGCGGCu-------UG-AACGccuGCGACGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 155944 0.68 0.738709
Target:  5'- uCCaCCGcACaaGgGGACGCUGCGGg- -3'
miRNA:   3'- -GGcGGCuUGaaCgCCUGCGACGCCgu -5'
9935 3' -58.6 NC_002641.1 + 126529 0.68 0.738709
Target:  5'- uCCaCCGcACaaGgGGACGCUGCGGg- -3'
miRNA:   3'- -GGcGGCuUGaaCgCCUGCGACGCCgu -5'
9935 3' -58.6 NC_002641.1 + 30134 0.69 0.650541
Target:  5'- uUCGCCGcAGCggcaaUGCGGAgaCGacgGCGGCAg -3'
miRNA:   3'- -GGCGGC-UUGa----ACGCCU--GCga-CGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 126914 0.74 0.40507
Target:  5'- uUCGuuGGGCUggGCGGAUGCUugccuagugGCGGCGc -3'
miRNA:   3'- -GGCggCUUGAa-CGCCUGCGA---------CGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 155558 0.74 0.40507
Target:  5'- uUCGuuGGGCUggGCGGAUGCUugccuagugGCGGCGc -3'
miRNA:   3'- -GGCggCUUGAa-CGCCUGCGA---------CGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 125466 0.77 0.266664
Target:  5'- gCCGCCGAGucCUacgGCGGcagaGCUGCGGCGa -3'
miRNA:   3'- -GGCGGCUU--GAa--CGCCug--CGACGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 157006 0.77 0.266664
Target:  5'- gCCGCCGAGucCUacgGCGGcagaGCUGCGGCGa -3'
miRNA:   3'- -GGCGGCUU--GAa--CGCCug--CGACGCCGU- -5'
9935 3' -58.6 NC_002641.1 + 48973 1.1 0.001605
Target:  5'- gCCGCCGAACUUGCGGACGCUGCGGCAg -3'
miRNA:   3'- -GGCGGCUUGAACGCCUGCGACGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.