miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9935 5' -55.5 NC_002641.1 + 29650 0.67 0.898375
Target:  5'- --gGCCUGCucuaaguggCUGUGuAGCUCgGGGCu -3'
miRNA:   3'- uaaUGGGCGua-------GGCAC-UCGAGgCUCG- -5'
9935 5' -55.5 NC_002641.1 + 4454 0.67 0.88421
Target:  5'- --aGCCUGCG-CCGUcucccgaGGGCUCCGAu- -3'
miRNA:   3'- uaaUGGGCGUaGGCA-------CUCGAGGCUcg -5'
9935 5' -55.5 NC_002641.1 + 119268 0.67 0.88421
Target:  5'- --aGCCUGCG-CCGUcucccgaGGGCUCCGAu- -3'
miRNA:   3'- uaaUGGGCGUaGGCA-------CUCGAGGCUcg -5'
9935 5' -55.5 NC_002641.1 + 93425 0.67 0.870535
Target:  5'- --gACCCGCAUCCGUGgauguauuGGCcccUCC-AGUu -3'
miRNA:   3'- uaaUGGGCGUAGGCAC--------UCG---AGGcUCG- -5'
9935 5' -55.5 NC_002641.1 + 4800 0.68 0.836768
Target:  5'- --gGCCCGUaccGUCCGaGAGCauaacgauucucgaUUCGAGCg -3'
miRNA:   3'- uaaUGGGCG---UAGGCaCUCG--------------AGGCUCG- -5'
9935 5' -55.5 NC_002641.1 + 118923 0.68 0.836768
Target:  5'- --gGCCCGUaccGUCCGaGAGCauaacgauucucgaUUCGAGCg -3'
miRNA:   3'- uaaUGGGCG---UAGGCaCUCG--------------AGGCUCG- -5'
9935 5' -55.5 NC_002641.1 + 29431 0.68 0.822428
Target:  5'- --aACCCGCGcuuuuUCCGUcauccGAGUUCCaucucGAGCg -3'
miRNA:   3'- uaaUGGGCGU-----AGGCA-----CUCGAGG-----CUCG- -5'
9935 5' -55.5 NC_002641.1 + 43525 0.73 0.565098
Target:  5'- -aUGCCCGCuucgCCGgacGAGCUagaaaugcaauccCCGAGCg -3'
miRNA:   3'- uaAUGGGCGua--GGCa--CUCGA-------------GGCUCG- -5'
9935 5' -55.5 NC_002641.1 + 96015 0.74 0.506345
Target:  5'- uGUUGCCCGUGUCaugggGGGCUCuCGAGUg -3'
miRNA:   3'- -UAAUGGGCGUAGgca--CUCGAG-GCUCG- -5'
9935 5' -55.5 NC_002641.1 + 110619 0.75 0.440295
Target:  5'- uUUACuaGUAUgCCGUGGGCUCCGGGa -3'
miRNA:   3'- uAAUGggCGUA-GGCACUCGAGGCUCg -5'
9935 5' -55.5 NC_002641.1 + 49007 1.09 0.003271
Target:  5'- aAUUACCCGCAUCCGUGAGCUCCGAGCc -3'
miRNA:   3'- -UAAUGGGCGUAGGCACUCGAGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.