miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9936 5' -52.6 NC_002641.1 + 112784 0.68 0.949053
Target:  5'- aUCCAcACUAUuagUCAGCAcuaGCgCGCGGGCg -3'
miRNA:   3'- -AGGU-UGGUG---AGUUGUag-UG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 129690 0.68 0.956781
Target:  5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3'
miRNA:   3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 154149 0.67 0.9676
Target:  5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3'
miRNA:   3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5'
9936 5' -52.6 NC_002641.1 + 153591 0.67 0.9676
Target:  5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3'
miRNA:   3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 96045 0.67 0.964345
Target:  5'- uUCCGAUCACcaUCAAaGUcCACCagGCGGGUu -3'
miRNA:   3'- -AGGUUGGUG--AGUUgUA-GUGG--UGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 70171 0.67 0.964345
Target:  5'- --aAACUGCUUugcgguguGCAUUACCACGGGg -3'
miRNA:   3'- aggUUGGUGAGu-------UGUAGUGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 152046 0.67 0.963326
Target:  5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3'
miRNA:   3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 128567 0.67 0.970638
Target:  5'- cUUAGCCACUCG-----GCCACGcGGCg -3'
miRNA:   3'- aGGUUGGUGAGUuguagUGGUGC-CCG- -5'
9936 5' -52.6 NC_002641.1 + 128882 0.67 0.9676
Target:  5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3'
miRNA:   3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 157252 0.67 0.973467
Target:  5'- gCCaAGCCGCUUGGCcgCAgCGCuGGCc -3'
miRNA:   3'- aGG-UUGGUGAGUUGuaGUgGUGcCCG- -5'
9936 5' -52.6 NC_002641.1 + 125221 0.67 0.973467
Target:  5'- gCCaAGCCGCUUGGCcgCAgCGCuGGCc -3'
miRNA:   3'- aGG-UUGGUGAGUUGuaGUgGUGcCCG- -5'
9936 5' -52.6 NC_002641.1 + 153906 0.67 0.970638
Target:  5'- cUUAGCCACUCG-----GCCACGcGGCg -3'
miRNA:   3'- aGGUUGGUGAGUuguagUGGUGC-CCG- -5'
9936 5' -52.6 NC_002641.1 + 128323 0.67 0.9676
Target:  5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3'
miRNA:   3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5'
9936 5' -52.6 NC_002641.1 + 108243 0.67 0.964345
Target:  5'- uUCUAACCACacCAaacauACAUCGCCACuuGCg -3'
miRNA:   3'- -AGGUUGGUGa-GU-----UGUAGUGGUGccCG- -5'
9936 5' -52.6 NC_002641.1 + 130426 0.67 0.963326
Target:  5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3'
miRNA:   3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 66814 0.67 0.973193
Target:  5'- aCCAAUCcCcCuACAUCugcaguauggacgGCCGCGGGCa -3'
miRNA:   3'- aGGUUGGuGaGuUGUAG-------------UGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 129371 0.66 0.978522
Target:  5'- cUCCGACgGaUCucCAUCGgCugGGGCc -3'
miRNA:   3'- -AGGUUGgUgAGuuGUAGUgGugCCCG- -5'
9936 5' -52.6 NC_002641.1 + 85941 0.66 0.976092
Target:  5'- aUCCGGCaa--UAGCAUCGCCcUGGGUg -3'
miRNA:   3'- -AGGUUGgugaGUUGUAGUGGuGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 116985 0.66 0.978522
Target:  5'- cCCGcACCGCccguaCGACAUCGCCuCGGacGCg -3'
miRNA:   3'- aGGU-UGGUGa----GUUGUAGUGGuGCC--CG- -5'
9936 5' -52.6 NC_002641.1 + 149030 0.66 0.984719
Target:  5'- aUCgCGGgaGCUCGGauuuguagCGCCGCGGGCa -3'
miRNA:   3'- -AG-GUUggUGAGUUgua-----GUGGUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.